Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02920 CGTTGCTTCTTCTAAGTTCTAATTTCCTCTCTCGTCTTCTCCTCCTTCTCCTTCTTCTTCCTCCCTCTGCGTTAGGTTTTTCCACAGTCACACTCTCCGCATCGCTCTTCTCTTCTTCTCATTCTCCTTCTCCGCCGACTCTCTATTCTTCGCAACCCTATCTCTCTCCTCCATTCACGATTTCCTCCGCTTCTCTCTCGCACGATAAGATATGTTCCGTGTCTGAGTTTTGGTTACCGCGATGGCGTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGACCAGAGCTAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGACGACCCAAAACTCATTGGGATCATGTCTTAGAAGAGATGGTGTGGTTATCTAAGGACTTTGAGTCGGAGAGGAAATGGAAACTAGCTCAGGCAAGGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGCTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAGGTTGCACTTAATATTTCTAAGGATGTCAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTTGATGAGAAGAAGAAAAAGGCTCTTGACAAACAACTTGAGTTTTTATTAGGGCAAACCGAGAGATACTCGACAATGTTGGCAGAAAATCTTGTGGATGGCAGAAAATCAGCAGAGAATAACTCTGCAGAGCATCGCATGAGTATTCAATGCAAAGATGTACATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTGGATGCAGCTGACAATGATGAAGAATATGATGTACGATCTGATGATGAATCGGAGGATGATGAGCAAACAATTGAGCAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCGTGATGAAATGGATCTTCCGATTGAGGAGTTACTTAAACGTTATGCTGGGGAGAATGGGGAATCTATAATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGGCCAGAGAATTGTTAGAGCTGGTGATGAAAACAGGGATGATCTTGTATCTGTCAGTAAAATTAGCACAAGCAACTCTAACATGGTCTCTGGTCGACGTTGTGATGAGTGCAATGGTGATGTTGCTACACCAACAAACAATCTATCTCTATGTGAGGACGGTCTATCTGAAAATCTAAAAGAGGTCCCCAGTGAGACAGCGAATGAAGATTTTGCTTATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGAACAGAAGATAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAACTGGAAAGAGTTGATGCAATTGATCCTAAAGATGAGATTGCATTATTACAAAGGGAGAGTAGCATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCAGGCGACAATGAAGATGGGGAATATGAATCTGATTATGCTTCTGCTTTATCAGAGGACCATTCGGGTTCTCCAGTCCATGAGGATACTGGGCAGAAGGAGGATATCACTGTTCCTATGGATGAAGATATCAAGTCAGCTGAGCACCCGGCTGCTGTACAGTCCCAGGCAGAAGAGCAGTGGGAATTACCTCATGAAAATTTGGAAAACAGAGAAAGTGAGGATATAATCGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCCACTGGAAACACCTTCTCCACAACTAATGTCCGTACAAAGTTCCCTTTCCTACTCAAATACTCTCTACGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGGCTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAGGGGATTTGGGGCCCACATTTAATTGTGGTACCAACTAGCGTAATGCTCAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACATAAAAGGCAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTACAGATTAGTTATTCAGGACTCCAAAGTTTTCAAACGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTTATTAAAAACTGGAAGTCACAGAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACACCTCTGCAGAATGATCTTATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGACTAAAGCGAGATGTGGAGAAGCAACTGCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACCCAAGCCACTCTTGCAAGTGCCAACTTTTTTGGGATGATTAGTGTTATCATGCAACTTCGAAAGGTTTGCAATCATCCTGACCTATTTGAGGGCCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTATTGAAATTCAGTTAAGTTCTTCTGTTTGCTCCATGCTTTTGCCTAGTCCCTTTTCAACAGTGGACCTAAGGGGTTTGGGTCTTTTATTCACTCATCTTGACTATAGCATGGCTGCTTGGGAAAGTGATGAAGTACAGGCTCTTGAGACCCCTGCAGCTTTAATCATGGAACGTACCGATAAAGCTGAGCTAGAAGTAATTAGGCCTCTGAAATGTCCAAAGAAGTGGCAAGGAACAAACATTTTTGAAGAGATTCAAAGGGCAATCTGGGAAGAGAGGCTAAAAGAAGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAGAAGACCCATCTACTCAACAACTTTAAGGGATCTTGTTACCTTAAGACATCCTGTGTATGATATTCATCAGGTGAAAGCAAACCCTGTTTCGTACTTGTACTCTTCAAAGCTAGCTGACATTGTTCTCTCGCCTATTGAGCGATTTCAAAAGGTGATTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGAGCACCCTCTCCTGTTTGCTGGTGCAGTACAAGTGAGACAAATGTGTTTCTACGCACATCTTACAAGCAGAAATGTTCTGAAGTTCTGTTACCTCTACTGTCACCAATCAGGCCTGCCATTGTCCGCCGGCAAGTGTATTTCCCTGATAGGCGCCTTATACAATTTGACTGTGGGAAACTGCAGGAACTAGCAATTTTGTTGAGGAAGCTAAAGTCAGAAGGTCACCGAGCTCTGATATTCACCCAGATGACGAAGATGCTGGATATATTAGAGGCATTCATTAATTTGTATGGCTATACATACATGCGATTAGATGGATCTACCCAACCGGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAACCCCAAATATTTCCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCACAAGATCGATGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGACTGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCTGGTCATAGAACACTTTCTATAAAAAATATGCCGAAGGAGAAAAACCAGAGCAATGGGGAAGTTTCTGTAACTAATGCAGATGTAGAGGCTGCGCTAAAATGTGTAGAAGATGAAGCGGATTATATGGCATTGAAGAAAGTTGAACAAGAAGAGGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAGGATGATGAGAATGCAGAATTAGGTGAATCTGTTTCAGCTTCGAATAAAGAGAATGCACTAATGTTAAACAGAAGTGATCATAAGGAAGATAGACCACCACAATCTGTTGCTGTGAAAGAAGATGATGCTGATATGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCAGCAGCGGGACAAGCTATCTCAGCATTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTCTGGAACTCTGGGATCCAATTATTGATAAAACAGCCTTGGAATCTGAAGTCAGAATTGAGGACACGGAGTGGGAGTTGGATCGCATTGAAAGGTACAAGGATGAGATGGAAGCTGAAATTGATGAAGATGAGGAGCCTCTTGTATATGAAAGTTGGGATGCTGATTTTGCAACCACGGCATATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGACCTTGAATATGAAGCTAGAATGAAAGAAGCTGAGGAAGAAGCTTGTGATTGTAAAAAGATTCAAACTCCGGGAGATTCAAAGCCAAAATCTAAAAAGAAACCCAAGAAAGCTAAATTCAAATCTCTTAAGAAAGGATCTCTAAGCTCTGGCTTGAGACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGATGAGGATGTCACTGGTCTTGATTTTGTGTCTCAAAATTCAACCATGCAGAAAAAACGTAAGAAATCTAAATTATCAACTGATGGTGAAGAAGAAAGGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGACCCTTCTGATATTTATGCTTCCGATTTAGAATCCAACTCATTAGTTGTGCATGATGAACATGCTGAATCAAGGACTAGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCTAGCAGGAATAAGATGGGAGGAAAAATATCCATCAATGCTGTGCCTGTAAAACAAATCTGGACAATAAAATCAGAGAAATTGAAAAAGGGAAACCATTGGTTGAAGGATTGTATTCCATCAGCCGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACGCTTTATGGCATGACTGCTGGTGGATCATACAGGGGGAGATATCGTCATCCTGTACATTGCTGTGAGAGGTTCAGAGAACTATTCCAAAAGCATGTCTTGTTGTCAATGGAGAATGCAAATCATGAGAAGATCAACAGTTCTGGCTCCGGAAAGGCACTTCTAAAAGTTACAGAGGATAACATTCGGATGCTGTTAGATGTTGCTTCCGAGCAGGTAAATAGGGAGTTGCTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAGGTGGCATCACATGTTGATCGCAGGCAAAATCCATCACCCACCCGTAATGGTCTCTATTTTGATCAGAGTTTCTTTACTTCCATTGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGGATGGCATTTGTGAATTTGGCCCAGAACAAGAAGTTAGTAGCAGCTGCACTTGATGATGCGACAACTAGGCAAGTGAACGACAGAGTCATCCTCTCTAACCAAGGGGAAGACATACCAGTGCGTGCAGATCAGCTGGATATAACTCTGGAGTTCCCAAAAGAGGAGAGTGACGTCCTATCTTCATTTCCATCCATTATAAATTTGTCAATATGTGGAACTGAACCAACACCATCTTTAAATAAGCATACAGCGGAAGATGAACTTAAAGCTGGTTTGTTCATTGCTGAGAATCGTTTCAGAGATTACTCAGATGAGGAGCAGGTTGCAGTGGGCAAAAAGGGGCATGCTGAAGTTGAAGTCTCACTTTGGCTAGAGATTACTCAGATGGAGGAGGCAGCGAGAGTTTGTGAAGAAGACAGCTCTGGATGGGCATCATCAGCCTTCCCAACGAATGATGCAAGGTCTCGACCTGGATCCAGGACACAATCCTCTGGAAAGCAAAAATCTTCCGTATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCCAAAAAAACTTCAATGGATCCTTGTGAAATGCATCAACATCAGGCTGACTCAATATTCCAGTCAATTCCATCACTTAAGGATCTGAAAATTGACCATACTTCTTCATTCACTACGGATGTTGAAATTGATGGTGTGGATAGCATTTTCTCCTTTGACTTGAATGGGGAAAGTTTGTTGGAAATGGAAAGTGTTGGTACGATCCCACATGATTATGTGGTTGGTTTAACTTCAGACCTTGATGACTGTAGAGCATTCCCTGAACATACTGACATTAGATAAGGATCAAATCAAGCCTGAAATGCAGTTTTGAATGACCTTTGCTACTAAAATACAGAGCGGCGCATGCTTGGCAAGTTAGTCTTTGATCAGTTCATAAATTGCTCTTGGCATACAATTGGAACAATGCGTTGTTACAGTTCTCTCCTAGGCATGCCATTTTTGGATATACAGACAAACAAGTAAAGCGAAGCCTCCAGAAAGTTTCAATATGAAAAATTATAGAGATGTAGAAACAACCCTGTCAATAGTTTAATTTCTTACTGGGAATTTTGTATTGGCTTGGGAATTCTGCTCGAACATCACAGCGCCATTCTCCCATAGATCGGCACTGCTTGGTAAGAAAGCCTTCATTTTTTCTTCCCTCAAATGGTACACATGGATTTGTCTGGGATGTTTTGCATGCACACGTACATATTTTCTTAGCTAGGGCATGCCTAGGATTTGTAGTGCTTTAACTGTCAACATTTTGTTATGCAAGCAGAACAAATTGTTAGTTTTAGTGGCTAGTTCATTAGTTCCATTCATTTAGAACAACACTTTAAATTATTTAACATGAGTTTTACACCATCTTTATGCTTGAAATCTAATGTACATATTTTAGAATGGCTATTCCTTTTTATTTCCCTGTTCAAGGAACGACGTTAATGT 7102 0.4142 MASKGPRSKIDHETRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQARKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDGRKSAENNSAEHRMSIQCKDVHGDVINEPKEADVDAADNDEEYDVRSDDESEDDEQTIEQDEALITKEERQEELAALRDEMDLPIEELLKRYAGENGESIMKESSPEHSEDGQRIVRAGDENRDDLVSVSKISTSNSNMVSGRRCDECNGDVATPTNNLSLCEDGLSENLKEVPSETANEDFAYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQRESSMPVEELLARYKRDPGDNEDGEYESDYASALSEDHSGSPVHEDTGQKEDITVPMDEDIKSAEHPAAVQSQAEEQWELPHENLENRESEDIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMCGIEIQLSSSVCSMLLPSPFSTVDLRGLGLLFTHLDYSMAAWESDEVQALETPAALIMERTDKAELEVIRPLKCPKKWQGTNIFEEIQRAIWEERLKEAKERAAAIAWWNSLRCKRRPIYSTTLRDLVTLRHPVYDIHQVKANPVSYLYSSKLADIVLSPIERFQKVIDVVESFMFAIPAARAPSPVCWCSTSETNVFLRTSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISDCTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQSNGEVSVTNADVEAALKCVEDEADYMALKKVEQEEAVDNQEFTEEAIGRLEEDEYVNEDDENAELGESVSASNKENALMLNRSDHKEDRPPQSVAVKEDDADMLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIERYKDEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEDLEYEARMKEAEEEACDCKKIQTPGDSKPKSKKKPKKAKFKSLKKGSLSSGLRPVKEESQAEPMNIDDEDVTGLDFVSQNSTMQKKRKKSKLSTDGEEERRLKKSKKSKRDPSDIYASDLESNSLVVHDEHAESRTSESLVDLEQKTASRNKMGGKISINAVPVKQIWTIKSEKLKKGNHWLKDCIPSADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELFQKHVLLSMENANHEKINSSGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHVDRRQNPSPTRNGLYFDQSFFTSIGQPSQNSLKKSSERMAFVNLAQNKKLVAAALDDATTRQVNDRVILSNQGEDIPVRADQLDITLEFPKEESDVLSSFPSIINLSICGTEPTPSLNKHTAEDELKAGLFIAENRFRDYSDEEQVAVGKKGHAEVEVSLWLEITQMEEAARVCEEDSSGWASSAFPTNDARSRPGSRTQSSGKQKSSVSDSAKPSRSKSKKTSMDPCEMHQHQADSIFQSIPSLKDLKIDHTSSFTTDVEIDGVDSIFSFDLNGESLLEMESVGTIPHDYVVGLTSDLDDCRAFPEHTDIR 2070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1284 1298 - -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 248 278 - -
Pste4g02920 2070 CDD SF2_C_SNF 1038 1173 - -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1280 1306 - -
Pste4g02920 2070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 733 1227 IPR027417 -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 180 213 - -
Pste4g02920 2070 Pfam HSA domain 27 93 IPR014012 -
Pste4g02920 2070 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 248 293 - -
Pste4g02920 2070 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 755 820 - -
Pste4g02920 2070 SMART ultradead3 505 698 IPR014001 -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 395 433 - -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1939 1972 - -
Pste4g02920 2070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1053 1203 IPR001650 -
Pste4g02920 2070 Pfam Helicase conserved C-terminal domain 1052 1162 IPR001650 -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 345 359 - -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1 33 - -
Pste4g02920 2070 SMART bromneu2 23 94 IPR014012 -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1534 1562 - -
Pste4g02920 2070 FunFam Photoperiod independent early flowering protein 1634 1695 - -
Pste4g02920 2070 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1020 1269 - -
Pste4g02920 2070 ProSiteProfiles Myb-like domain profile. 1638 1691 IPR001005 -
Pste4g02920 2070 SUPERFAMILY Homeodomain-like 1636 1694 IPR009057 -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 345 370 - -
Pste4g02920 2070 SMART helicmild6 1079 1162 IPR001650 -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1934 1989 - -
Pste4g02920 2070 Pfam SNF2-related domain 526 798 IPR000330 GO:0005524|GO:0140658
Pste4g02920 2070 CDD DEXQc_SRCAP 509 731 - -
Pste4g02920 2070 Gene3D - 478 754 IPR038718 -
Pste4g02920 2070 Gene3D - 755 829 - -
Pste4g02920 2070 PANTHER HELICASE SRCAP-RELATED 15 1966 - -
Pste4g02920 2070 FunFam Photoperiod-independent early flowering 1 479 754 - -
Pste4g02920 2070 Coils Coil 211 231 - -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1460 1475 - -
Pste4g02920 2070 Gene3D - 1014 1269 IPR027417 -
Pste4g02920 2070 Coils Coil 1390 1410 - -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1460 1568 - -
Pste4g02920 2070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 521 686 IPR014001 -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 1973 1987 - -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 185 210 - -
Pste4g02920 2070 Gene3D - 1635 1695 - -
Pste4g02920 2070 MobiDBLite consensus disorder prediction 279 293 - -
Pste4g02920 2070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 731 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02920 Pste-Chr4 20580797 20603831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02920 529 801 RAD5 or RAD16-like Gene Family AT5G43530 30.124 2.33e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste4g02920 SNF2_N 2.8e-70 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02920 4 20580797 20603831 Pste4g02920 4 20580797 20603831 ECH