Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02898 ATGAAAGGGCAGAGCAGAGAATTTATTGATTCGGGCTCCTCATCTGTGGTCTCAAACGCGCTTCAGCAGCGGCTGCAATTCATTGTGCAGAGCCGAGCGGAATGGTGGGTGTATGCCATCTTCTGGCAAGCCAGGAAAGACAGTGATTCCCGTATGACATTAGAATATGGGGAGGGCTACTTTCGGGGCAAAGAGGAACAAAGAATGAGCGTGAACGACATGGAATGGTTCTACAGGGTGTCGCAAACTCGATCCTACGTTGCCGGGGACGGCGTCATTGGGTGTGCCTTCAGCTCAGGTGTAGATGTCTGGTTGAGCGGAGTGAACGAGTTTGAAATGAACGAGTGTGACGACAGAGCGAGGGAAGCACGCAGTCACGGGATCCACACTTTAGTATGCGTCTCCATGCCACGTGGCATCCTCGAGCTGGGTTCGTGTCATGTGTTGGCCCTCGATTACGGTCTTCTCCAAATGGCCAAATCAGTGTTTGAAAGTCAGAATAACAATCTCAACCCCAACCCATGGGGCCTCGCCCTGCTTCCAAATCCAATCACAGACAAAGATGCAACAGCCAAGGTCGATGGTTCGTCCACTGACTCATCAGATGCCGACGCTCCTTTCCCGTTTGCTGAAGGAACCAATAATGTTCCGAGAAGGTCTGGGACTGGGAGGGCACGTGAGCCGCTGCCTATAAATCACGTGGAGGCTGAGAGACAGCGCCGCGAGAAGCTGAACCAGAGATTCTACGCTCTTCGCTCTGCTGTCCCCAACGTGTCCAAGATGGACAAAGCGTCCTTGCTCTCCGATGCTGTTGACTACATCAATGAACTCAAGGCCAAAATCCACCACCTGGAGGTTGCATTGGAGAGCAATGCCTACAGACACAAACAGGAAGCTGCGGACCATGTCCAAACCCAAACCTCTGCATCTGCAACCACTACTAATATGAGAGTTGAAGTAAAGATCTTGGGAACCGAGGCCACAATAAGGGTTCAGAGCCTCAACGTGAACCACCCCTCTGCAAGGTTAATGGATGCTCTCAGGGACATCAATTTGCAAATTCTCCACGCCACAATGTCCAATATCAAAGAGATTATGCTGCAAGACATCGTCGTCAGGCTTCCGCATGACCTCATGACCGAACACACCCTCCAAAATGCCATACTTCACAGACTCTGA 1179 0.514 MKGQSREFIDSGSSSVVSNALQQRLQFIVQSRAEWWVYAIFWQARKDSDSRMTLEYGEGYFRGKEEQRMSVNDMEWFYRVSQTRSYVAGDGVIGCAFSSGVDVWLSGVNEFEMNECDDRAREARSHGIHTLVCVSMPRGILELGSCHVLALDYGLLQMAKSVFESQNNNLNPNPWGLALLPNPITDKDATAKVDGSSTDSSDADAPFPFAEGTNNVPRRSGTGRAREPLPINHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINELKAKIHHLEVALESNAYRHKQEAADHVQTQTSASATTTNMRVEVKILGTEATIRVQSLNVNHPSARLMDALRDINLQILHATMSNIKEIMLQDIVVRLPHDLMTEHTLQNAILHRL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02898 392 PANTHER MYC 18 391 IPR045084 GO:0003700|GO:0006355
Pste4g02898 392 SMART finulus 234 283 IPR011598 GO:0046983
Pste4g02898 392 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 21 67 IPR025610 -
Pste4g02898 392 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 70 163 IPR025610 -
Pste4g02898 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 294 IPR036638 GO:0046983
Pste4g02898 392 MobiDBLite consensus disorder prediction 188 230 - -
Pste4g02898 392 Gene3D - 225 292 IPR036638 GO:0046983
Pste4g02898 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 277 IPR011598 GO:0046983
Pste4g02898 392 Pfam Helix-loop-helix DNA-binding domain 232 277 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02898 Pste-Chr4 20457735 20458913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02898 21 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 28.381 1.63e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g02898 bHLH-MYC_N 4.9e-20 CL0161