LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g02887	GCAATTTGAATGAAGGGTTGGTTGGAGATAGAGATATAAAAAAAAAATCATATGGGCATCTGATAAAGCGAAGATATAATCCAGTGGTAGGGTGAGTGGTTGGTTGCAGAGATCAGAGATCAGAGATTAGAATGAGTTGGCGGCAGGGGAGCTGAAAAGAAAGAAGAAAGAAGAAAGAAGAAAGAAGAAAGAAGTGAGGGTCGAATTAGGGTTTGTTTGTTTGTGTTTAAGAAAGAGATGCATGATGGGTGAGGGAGGGTCAATGACTATGCGCAGCCCTCTTCCTTGTTCCTTTCTTTTCTCCAGCAACCACCATATGTCTTCCCTCGAATGTCGATTCCGATCGCCGTTCGATTCTTATTCGGTGGCTTCCGAGGCCTTTTCCGAACCCCACCCTTCCCCTCTTTGATATTTCATACCTCTCTTCTCTTCTTCTCCCTCTCCCTCTCTTCCCCATGGCCACCTCCCACGTTGTCCAGAAAGATCCTACCTCCAGATATGCCCGGTACGATGAAATGCTGGGGAAAGGAGCCTTCAAGACTGTATACAAAGCTTTTGATGAAGTGGACGGAATCGAAGTTGCGTGGAACATGATCAGCGTTGAGGACCTTGTGCAGACTCCGCAGCAGTTGGGAAACTTATACTCCGAGGTTCACTTGCTCAAGTCCTTGAAACATGACAATGTCATCAAGTTGTATAATTCTTGGGTCGATGACACCACCGGCACCATCAACATGATCACCGAGTTGTTCACCTCTGGGAGTTTGAGGCAGTTCAGTTTTTATTCGTTCATTCATTTAGGATTTCGTATAATTCATTTTCATCATTTCTAATCTGATCTTATTCAGATGACTCCCTTTATTAATCTCAATCACGTATTTACTCTGATATCAATGTCTAATTAGTCTGAATCACATGTTTACGCTGATATGAGTATCTATTTCCTTTCATTTTATCCACTTGATGTCATTAAGATGTGTGCCAAAGGGTTTTAACTTTGTGTTCCTTGTCTCACGGGCTGAGTCTATTGAATTTGCTTTTAATGCTAAGTGTCCATTGATTTACATTTTCATAGAGTTGATTTTGGTGACATTGATTTTAGCTGTTAAATGTGATTCAGATGTGAGCCTTTGTTAATACGAATCACTTATTTACCTTGAAAATGCAAGAATTATTGTTTTAACTTTCAAACATATAGGGATAAGTCTTAGGTCTTTCCTATTTTTATAATCATTCATGTGCTGTACAGGTACCGGAAGAAGCATAAGACTGTGGATATGAAAGCCATCAAAAACTGGGCACGGCAGATTCTGTGTGGCTTGTGCTTTCTGCACAGTCACAGTCCTCCTATTATTCACAGGGACCTCAAATGTGATAATATTTTTGTCAATGGTAATAGTGGACAGGTTAAGATTGGAGATCTTGGATTGGCAATTGTCATGCAGCAGCCTACTGCCCGGAGTGTCATTGGTACACCAGAGTTCATGGCCCCAGAGCTTTATGAGGAGGAGTACAACGAACTTGTTGACATATATTCCTTTGGGATGTGCATCTTAGAAATGATCACTTGCGAGTACCCGTATAGTGAATGTAAAAATCCAGCACAGATATATAAAAAAGTAACCTCTGGTATCAAGCCTGCAGCTCTTGCTAAAGTAAATGATCCTAAAGTGAAGCAATTTATAGAGAAGTGTCTAGTTTCAGCGTCTATGAGATTGTCAGCAGCTGAATTACTGAAAGACCCATTCCTTGTAACTGAAAACACAAAGGAGATCAATCATGATACACTTCCGCTGCCTAATACTTTCACCAAATTGGTGGATCCACCAATGGGCAAGCCTCATCCCATGGAGATAGATTCTAACTCCAGGAAAACTTCACCCGGTTCTTCCGTGGGAAGAATTGAACAAACTTCACAAGTTATAACTTTTGATCTTGTTAGGATGACTGAGAATAATGAATTTAGGTTAAGAGGGGAGAAAAATGCTGAAAGTACAGTTTCACTTACGCTGCGAATTGCAGATGCAAGCGGTGGGGCAAGGAATATCCATTTTCCATTCTATATCGATTCTGATACTGCAATTTCTATTGCTGAGGAGATGGTGGAGCATCTGGAACTAAAAAAAGGGGATGTATCTGTCATTGCAGAGCTAATACATGACATGGTTGTTAAGCTTGCGCCCAACTGGAAACCCTGGTGTGAAAACCTATCATCAGGAACAGATAATCTGTACAGGCCTTCTTTAGAAGTTCAGAATGGTGAACAATTAAACTGCCATTGGCCATTACGATCAAGTGATTATGATATGAAGACAATGTATGAGGATCTAGTTCACTCACGGCCTGTGGATGGTGATGATCAGGAGAAACAAGAATCTGTTATGTCAGGCATATCAGCGGAGTGTGGGATTACAGTTGCCTCAGATTCTAAAGGTGTAGAACCCGACAATTTTATTTTTGATGAATTCTGGGAGGGGATCGATGTATTCAATTCCAATTCAGATGTCAGATTTTGTGGGCAAGACGATGGACGCAAGAATCAATCAGAGAACTCAGCAGGCTCTTTAATCAATTCATGTTGCAGTCCATCCAAAATTTTTGACATATTCAGTACGTGTTCTCTTACTCTAGCTAACAAAGATCATTCAGACGAGCTGCAGTTGGAACTTGAAGCAATAGAAACACATTATGAACAATGCTATCGTGAGCTTGTGAGGATGAGGGATGAAGCCATAGAAAATGCGAAAAGGAGATGGATGACAAAGAAGATACCAGTTATGTGATACATTAGGATGATTTTTTGTGATTGTTTTTCTAATATTTTTTGGCATTCGTTTACTGCTTATATTTTGCCTTGCTTTTTCTCATTTTTTACGACGTGATATTTTTTTTGTTGGGTATGGAGCATGGCTTGCAATAGGCCGTGTTATTCTAATAATAGATCATAGATACTATATGTGGATGGTGACGAAATAGAGCTATCTTTTGATTAAGTGTGAA	3000	0.402	MKAIKNWARQILCGLCFLHSHSPPIIHRDLKCDNIFVNGNSGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPKVKQFIEKCLVSASMRLSAAELLKDPFLVTENTKEINHDTLPLPNTFTKLVDPPMGKPHPMEIDSNSRKTSPGSSVGRIEQTSQVITFDLVRMTENNEFRLRGEKNAESTVSLTLRIADASGGARNIHFPFYIDSDTAISIAEEMVEHLELKKGDVSVIAELIHDMVVKLAPNWKPWCENLSSGTDNLYRPSLEVQNGEQLNCHWPLRSSDYDMKTMYEDLVHSRPVDGDDQEKQESVMSGISAECGITVASDSKGVEPDNFIFDEFWEGIDVFNSNSDVRFCGQDDGRKNQSENSAGSLINSCCSPSKIFDIFSTCSLTLANKDHSDELQLELEAIETHYEQCYRELVRMRDEAIENAKRRWMTKKIPVM	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g02887	501	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	1	362	-	-
	Pste4g02887	501	ProSiteProfiles	Protein kinase domain profile.	1	158	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g02887	501	Coils	Coil	457	484	-	-
	Pste4g02887	501	Gene3D	Transferase(Phosphotransferase) domain 1	1	166	-	-
	Pste4g02887	501	MobiDBLite	consensus disorder prediction	186	206	-	-
	Pste4g02887	501	FunFam	probable serine/threonine-protein kinase WNK9	1	163	-	-
	Pste4g02887	501	Pfam	Protein kinase domain	2	158	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g02887	501	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	241	297	IPR024678	GO:0004674\|GO:0005524
	Pste4g02887	501	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	25	37	IPR008271	GO:0004672\|GO:0006468
	Pste4g02887	501	Gene3D	-	239	320	-	-
	Pste4g02887	501	SUPERFAMILY	Protein kinase-like (PK-like)	3	212	IPR011009	-
	Pste4g02887	501	SMART	serkin_6	1	158	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g02887	Pste-Chr4	20381828	20385297	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g02887	2	497	MAP Kinase Kinase Kinase	AT5G41990	46.774	1.62e-130	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Pste4g02887		Pkinase	1.6e-32	CL0016