LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g02883	TCTTCTCTGCAGATTGCAGTGTTGTTGACACTTGAAAGCTTGTTATGTTACTATTTGCGTAATGCCTTCAAGTCACAAATTTATTTGGTAACAATTTGGTTAGTGGCAAATCATATTACAATGGCTGAGCCTCTTAATATTACAACTCTAAGGAATAAGCTTAAGACTCTTTGTGCTGTGGATGCCTGCTCCTACGTCATTTTCTGGCGCATTCATCCTCAAAATTCCTTGTTGTTGACCGTGGAAGATGCATATTATGAAGATCAATTGGGAGAACAGATTGTCAACACGGTTCCACATGTTCATGTGATGGCCGAAGGAATTGTTGGCCAAGTCGCTTTGACTGGCGAGCACAGATGGGTGGATTCAGATGGTCAAATGTGTGAGGATAATTTTGATTTGTATCAACAATTCTCATCTGGGATAAAGACAGTTGTGGTGATATCTTTTAAGCCATGGGGAGTGGTACAATTTGGATCCAAAAAGAAGATATTAAAGAGAGTGAAATTTGTGGAACAAACAGAAAGGTTGCTGTTGGGTATAGAAGATGAGGGTGTTCTTGATGTATTAAATGATAAAGTTCTGTCTCTAGATTGTGAAAGTTGTGAGCTAAATGGATTATTGGCTTCCATTTCTTCTGAAAATTTATATGATTTGAATATCAAATCTATGCATGGTGATAATTCTGAAATGCTATCGGGAAATTCCAATACCTGTGCAAGTCTTGATGATTCCTTCCCTTCCATGGATATGATTTTTGAAGGGACAACACCAACGCATGGATTTTTTTGCTCTCATCTTGGCAATCAATTGACACCTGTCATGGAAGCTCAAGCTGTATTCTCAAATATGGATAGTACTGATTATTCTACCAACAACTTAATTGCGAGAAATCCCAGTTTTGGCACATGGAGTGGAGAAGTTTCATCATTGGATTCACTGGGGCGACAACCGGTATCTGAAATAACTATAAGGACTAAAGATGTAGCCGATATGTACTGTAAAGAAGCAAATGCATTTTCTAGTAACAAACTTGCAGTTCAGGATTCAAAATTGAACTCATTATCTAGTGTGAATAGACTGTTAGACTCAACAGGCCAGTTTCAAGACCTCATAGGAAATACACTGGATATCCAACATTTTGCTGAATCTAGTATAGTGACAGAAGTTAATTATCCTGATAGTATCAGCATGATGCATGAATTCTCAAAGGACTTCGAGCAATTTGATACATTAGATGAATTTTCAAAGTTCTTCTCTATGGATGATTTCTGCCAGTTGTTAGCTCCTGCAGAGCACAATATTTGTGAAACAGTGACAGCATTGAATGAGTCACAAGAATTTAATGCCACATCTTTTGGTGTGGTTGGTAATAGTGCCATTGATGATGGTCCGGTCACATGTCAAGCTGTGCATAACAGTTCCATCATAGCTACTGCCAACTTGGATGGTCAAGAAACATCTACAGTTAAGCGTAGTGCTGAAAGCATGGGACATGGTTTGAGCAGTGGCCAAGTTGAGGAGTGGTGGGGCAGTATGGCTATGCTTACACCAGTGATGACTGCGGCTGCTAATGACACTGCTTTCTATGATTGCATATCAGAGTTGAATGTTGGTACATTAGGTGGGTCTGGGAAGAGATTATTCTCAGACTTAGGAATTGAAGAGATTTCGAATGGTTCTAAATTTGGAGATCATTTGTCGACCAATAAAAAGCAGAGGACAGAATACTCACATGCGATTAGAAATGCAAAGCCCTTGGCAAGTCATGCTTTAGTGCAGCCCGTTGCTAAATTGGATATGACAAACAATCTTGTACACAAGAAAGAAGTGTTCCCAAAGTCACAGGTAGGAGTTGGATGCTTGCGGATAAATGAAAGAAATAGTAGTACTGGGAGGACTAATCCAGCACGTGCAAAGCCTCAAAAGCCAGTGGAACACAATAAGGTCACCAGGAAAAGGGTTAAGCCAGGTGAAACAACTCGACCGAGACCGAAAGATCGTCAACAGATTCAAGACCGCATTGGAGAGTTGAGAATGATCATCCCTAATGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCGAACCATCAGATACATGCTATTCTTACAAAGCATTACCAAGTATGCAGACAAGCTACAAGAAACCAGAGAGCCTAAGCTCATTGAGCAGGCAAATGAAAAGGTTCTAGAAGACAGTAGCGTAGAAGATGGCAGAAAAAGTGGTGGTGGTGTTACATGTGCATTTGAAGTGGAAGGTCAAACAATGGTATGCCCAATTATAGTGGAGGACATGGAACCACCTGGCCAAATGCTTATTGAGATGCTATTTGAAGAGCAGAGTTCCTTTCTTGAGATAGTGGACATCGTTGGGGAGTTTGGATTGAATATCTTGAAGGGAAAGATGGAAAGCAGGGAGAATAAAATATGGGCACGCTTTATTGTTGAGGCGAAGAGACATGTAACGAGGATAGATGTATTTTGGTCCCTCATCCGTCATCTACAACAGAAAAATGCATTTGGAACGGATTCAGCTAATAAGCATTGTAATATTACTGATGTTGGCTTCTCTTAA	2577	0.4005	SSLQIAVLLTLESLLCYYLRNAFKSQIYLVTIWLVANHITMAEPLNITTLRNKLKTLCAVDACSYVIFWRIHPQNSLLLTVEDAYYEDQLGEQIVNTVPHVHVMAEGIVGQVALTGEHRWVDSDGQMCEDNFDLYQQFSSGIKTVVVISFKPWGVVQFGSKKKILKRVKFVEQTERLLLGIEDEGVLDVLNDKVLSLDCESCELNGLLASISSENLYDLNIKSMHGDNSEMLSGNSNTCASLDDSFPSMDMIFEGTTPTHGFFCSHLGNQLTPVMEAQAVFSNMDSTDYSTNNLIARNPSFGTWSGEVSSLDSLGRQPVSEITIRTKDVADMYCKEANAFSSNKLAVQDSKLNSLSSVNRLLDSTGQFQDLIGNTLDIQHFAESSIVTEVNYPDSISMMHEFSKDFEQFDTLDEFSKFFSMDDFCQLLAPAEHNICETVTALNESQEFNATSFGVVGNSAIDDGPVTCQAVHNSSIIATANLDGQETSTVKRSAESMGHGLSSGQVEEWWGSMAMLTPVMTAAANDTAFYDCISELNVGTLGGSGKRLFSDLGIEEISNGSKFGDHLSTNKKQRTEYSHAIRNAKPLASHALVQPVAKLDMTNNLVHKKEVFPKSQVGVGCLRINERNSSTGRTNPARAKPQKPVEHNKVTRKRVKPGETTRPRPKDRQQIQDRIGELRMIIPNGGKCSIDSLLDRTIRYMLFLQSITKYADKLQETREPKLIEQANEKVLEDSSVEDGRKSGGGVTCAFEVEGQTMVCPIIVEDMEPPGQMLIEMLFEEQSSFLEIVDIVGEFGLNILKGKMESRENKIWARFIVEAKRHVTRIDVFWSLIRHLQQKNAFGTDSANKHCNITDVGFS	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g02883	858	PANTHER	TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED	49	851	IPR043561	GO:0003700\|GO:0006355
	Pste4g02883	858	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	655	704	IPR011598	GO:0046983
	Pste4g02883	858	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	668	710	IPR036638	GO:0046983
	Pste4g02883	858	MobiDBLite	consensus disorder prediction	626	670	-	-
	Pste4g02883	858	Pfam	bHLH-MYC and R2R3-MYB transcription factors N-terminal	98	175	IPR025610	-
	Pste4g02883	858	MobiDBLite	consensus disorder prediction	640	670	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g02883	Pste-Chr4	20352513	20357615	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g02883	510	845	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G27230	39.003	1.05e-60	216