Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02876 AAGAAACTCACCAAAGAAACGCAATTCTCTCGGAATAGCAAGCACCCCACCGAGTTTATGAATGTTAGGATCATGAGTCTTCCAGAAGCTGCAACTAGCCCTCCTCCACATCTCTATCCACAGGAACTTCAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCAATACTTTTTTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCGTCTCTATCTGCCTCTTCTCCCCACTTGCTTCCAAGGACCATTGCCAATCCATCAACCACCACTCGTTATCATTCCTCACCTTGTCGTTTGGATCTGACCCTCCAATTCCTGGATAAACTTCCAAGAATTTTATTTGATGAGGATTTGATAGCAAGGGATTCACTATGTTGTGTTTGTCTGGGGGAATTTGAGCTGAAAGAAGAGGTGCTACAGATACCTTATTGCAAGCACGTGTTCCACTTCGATTGCATACATCACTGGCTTCAATCAAACTCCACTTGTCCACTATGTAGATGTTCCATCATTCCCACTGCCAAGTTCCTCAATCCAGCACCGCCTATTAATATTATATCAGACCCACCCCAGCAAGGTGCTATCATTTCGGACTCTCCATTACAATTGCCACCTCAGCCACAAGATCGTGAACTTGGTGCTTCCTCAAATGCTGCTAATTTCTCTAGGGAGTGATACATATTAGCTTCATTATAATAATGCCCATAGTTAATTTCAAGAGCTACACACCAAGGTTGTGTAGTTGTCAACCCCAATTACACCAACTTGTGATTTTTCTTTTCCAAAATATGAGAGAAAGTGCAAAAGTGTAACTAATTGATAGCAGCAATAAAAATTATGTCTTGTAAGCAAAAGCTATCAATTTGTCTTTTGCGTGGCCG 905 0.4155 MNVRIMSLPEAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSASSPHLLPRTIANPSTTTRYHSSPCRLDLTLQFLDKLPRILFDEDLIARDSLCCVCLGEFELKEEVLQIPYCKHVFHFDCIHHWLQSNSTCPLCRCSIIPTAKFLNPAPPINIISDPPQQGAIISDSPLQLPPQPQDRELGASSNAANFSRE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02876 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 161 IPR013083 -
Pste4g02876 213 CDD RING-H2_EL5-like 114 156 - -
Pste4g02876 213 SMART ring_2 114 155 IPR001841 -
Pste4g02876 213 MobiDBLite consensus disorder prediction 182 213 - -
Pste4g02876 213 Pfam Ring finger domain 114 156 IPR001841 -
Pste4g02876 213 SUPERFAMILY RING/U-box 92 164 - -
Pste4g02876 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 174 - -
Pste4g02876 213 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 83 161 - -
Pste4g02876 213 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02876 Pste-Chr4 20270476 20272249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02876 6 161 C3H Transcription Factor Family AT4G10150 37.725 7.68e-35 122