Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02845 CAATTGTTGGTGCCACCATCATTCAGTTCTCTTTATTTTTCCACTTAGTAATAGTAATTACTGATAGTACCATAACATCATTATTCTATTTTCTTGTGTCTGAGGTATCATAGTTGATGAGTTTAGTCTTGTCCCTTCTATTCCCAAATACTATCAATTTGATTTCCTCTGAATCTGTCTTTGATGGACAAGGCAGCTGCTGAACTTCAAAGTGAGGCAGCAGATCCTGCCCTTCTTCTTCACCATCAGAATTGTGCTGGAAATGGAATAGGTGTCAGTACCTCCTTGAATCCAGAGTCCAGAAGACCAATACTCTCCTCTCTGCAAATCCCAGCAAGGTCAGTGGAAAGTGCATTATCTTCTTTTACCAAGACAGATGGTCCTACGTTGATTTCAAGCCCAGGTTCCAGTAAAGGACTGCCCCCAAGACCAAATTCAGCCAGAGTCAAGTCCACTATGAGAACTTTACTCTCTGAGAGGAGCTTTAGGGCTAAGAATAGTTCACAAGATAGTGAAAGGACAGTTCTGATTGTTCCTGATAACTTACCGACAGATGGTCCTGTGGATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAATGAAAGCAGCACATTCATTGCCAGTTACTCCAACTGCAAACCCTGGTGCAGAGAATATCCAAGGGAGACATCTAGGGTGTGATTCTGAATCAAGTAAAATGAGAGTAAATCAGCACATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAAGTGCTAATTTAAGGCCCACAGATTCTAGAAGCCTGATTCGTGTAATTTCATTAAGATCACTTCCAGGAACTAGTGGTGGCATTTCAGCTCACAATGCTTCAGGATCGGGGATTGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTGTGTAGGATTTGTTTGGTGGATCTTGGGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGATTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTACTCGGCAGCCATTCAATACACCGGGACCACAGCAGACAGAAGCCACTTCTTACAGGCAAACTGGTTGTAATACTGCTAGGTCACTTCTGGGATTGTTAGATTTCATATGCCGCAAGATATGGCAGGATCTATCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATTTGCGCACTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGGTTCCTTTCATCTATGATTGCTTCGACCATGGTGAGTGGGAGTTACATGTGGGCTTACGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACTATACTTAATGTTAATGCCATCCTCTCAGTTCTTCTCTCGTCATTCACTGGATTTGGGATCGCAATAAGCTTGAATACTCTACTAACAGAGTATGTTAGATGGAGAACGAGGAGGATGATTCAATCTTCTACAACGCAGCAGCAGCAGCGCGGTGATCATGCACAGCAGCAGCAAGAACATCAAAGACTGCGTTCTCAACTTCAAAGGGAGCAGCAACAATGACAGTAGCTCCTCCAGCAAAAGTTAATGCCACAGGTTGAAACCAGTCTTTTGTTGCAAACATGAAGAATTTTTGTCTCGTTTGTTTATAGTTTAGTTCACTTTGGTTTGAACCAAAATATATGAATGAGTTCACCATGAGCAGCAATATGTTAACTGCGAATTACAGGATAGGAATGTTCTTTTAATATATTTCAAAAGAGGGGTGAGGCCTTCCTTTATATGATTATAGTATATGGTTGTCAAACTTGTCATGTATTTTTAATCATTAAATTCTTTCGTCAAGATTTGTACTGAAATTATTTTAAGATAATTGACTATTTCTTGGATCATTTTATCATGCCAACGGAGAGTGTAAATTGAGGGTTTTATTAAATTGTCAATGTAGAG 2103 0.4056 MDKAAAELQSEAADPALLLHHQNCAGNGIGVSTSLNPESRRPILSSLQIPARSVESALSSFTKTDGPTLISSPGSSKGLPPRPNSARVKSTMRTLLSERSFRAKNSSQDSERTVLIVPDNLPTDGPVDKPSTSRSLSLNKILFSSSMKAAHSLPVTPTANPGAENIQGRHLGCDSESSKMRVNQHMTRSVSVPVNIKSANLRPTDSRSLIRVISLRSLPGTSGGISAHNASGSGIVNEDASEDIPEEDAVCRICLVDLGEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKISNPQTVTRQPFNTPGPQQTEATSYRQTGCNTARSLLGLLDFICRKIWQDLSVLVLVSMLAYFCFLEELLVSDLRTRALAISLPFSCVLGFLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGIAISLNTLLTEYVRWRTRRMIQSSTTQQQQRGDHAQQQQEHQRLRSQLQREQQQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02845 510 Pfam RING-variant domain 251 298 IPR011016 GO:0008270
Pste4g02845 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 307 IPR013083 -
Pste4g02845 510 MobiDBLite consensus disorder prediction 480 510 - -
Pste4g02845 510 SMART ringv_2 250 299 IPR011016 GO:0008270
Pste4g02845 510 CDD RING_CH-C4HC3_MARCH 251 299 - -
Pste4g02845 510 PANTHER OS02G0165000 PROTEIN 36 490 - -
Pste4g02845 510 SUPERFAMILY RING/U-box 247 302 - -
Pste4g02845 510 Coils Coil 490 510 - -
Pste4g02845 510 MobiDBLite consensus disorder prediction 58 79 - -
Pste4g02845 510 MobiDBLite consensus disorder prediction 58 88 - -
Pste4g02845 510 ProSiteProfiles Zinc finger RING-CH-type profile. 243 305 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02845 Pste-Chr4 19966646 19980483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02845 236 305 C3H Transcription Factor Family AT2G37950 42.254 2.29e-13 67.4