Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02825 AAGAAAACGTGAAGAGAAGAAAATAAGGAAAAGCTTTTGATTCAACTCAGAAAACGCTCTGAAAAATACATAATAAAATTCTCGCCGATTTCCTCGCGAAACTGTCTCGCCCTAAAGCAAATTACGCATTCATTCAGCTGATCGTGGTTGTGTGATAAAGCGAGCAGATAAGAGGATCGTGGATTGGGAAGCGTAGTTTTGTGTTGTTTTTTGTTTTGTTCAGCATTTGCTTCTTGTTATAAGAGCAAAGTCACGATTTGTGCAAGTATGAGAACTTCGTGGGCAGATTCTGCTGACAACTCAGCCAATGGTTCTGGCAATACCAATGCCTCTGCTTGCCCACCAAGGGGAGCATATGTGCCGCCGCATCTAAGGAACCGGACATTGTCGTCGGAGGCTCCTCCTCCTCCTCCGGCGGCTCACCCGGCTCCTTTGCCGGTGAATGACAGGGTGAATCATGGTGGTCAAGTTACCCATCAGGGTGGTTACTTTAAAGCTGATCATGGAAGGCAACAACAACAACAAGGGTATGGTTCTAGTTTTCAGAGTGGTGGTTGGAATGGTAGAGGGGTGGGGAGGGAGCGTGGGAGGCGTGAGGTGAACCCTTTTGAGAATGATGAAGCTGAGGATCTTTCTATCAGTGAGCAAGAGAATACTGGGATTAACTTTGATGCATATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTGCCCCCTCCTGTGAATACGTTTGCTGAAATAGATTTGGGTGACGCATTGAATCAGAATATACAGAGGTGTAAGTATGTGAAACCGACCCCGGTTCAGAGGTATGCCATTCCAATTTCTCTTTCGGGGAGAGACTTGATGGCCTGTGCTCAGACTGGGTCTGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAACAATATAATCAAAGACCGCGTGTGGCACGAACTGCTTTTCCCCTGGCGCTTATCCTCTCCCCTACACGAGAGCTTTCTTGTCAGATACATGATGAGGCCAAGAAGTTTTCTTATCAAACTGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCACCGATCACCCAACAGTTACGGGAGCTTGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGACGTTTGGTGGATTTGCTTGAGAGGGCTAGGGTCTCGTTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAGCAAATGGACATGCCTCCTCCGGGCATTAGACAGACCCTACTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCGGATTTTCTTTCAAGTTATGTCTTTCTAGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTACTTGATTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGGGAAACTGGCATTGATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCATTCAAGACTGGAAACACGCCAATTCTAGTGGCTACAGATGTTGCAGCACGTGGTCTTGACATACCACGAGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCATCGGATAGGAAGAACTGGGCGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGAAGGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCCGCCTGGCTCACCCGATATGCAGCAAGGGCTACTTACAGTGGTGGCCACAGAAATAGGAGGTCAGGAGGATCCCGTTTTGGTGGTCGCGATTTTAGGAAGGATGGTTCACTTAATAAAGGAACAACAGATTTCCATGGTGGTGGAACTGGTGGTGGATATGGCAATTATGGTGGAGGATATGGTCAAGGCGTGACAAGCGCTTGGGAT 2094 0.4604 MRTSWADSADNSANGSGNTNASACPPRGAYVPPHLRNRTLSSEAPPPPPAAHPAPLPVNDRVNHGGQVTHQGGYFKADHGRQQQQQGYGSSFQSGGWNGRGVGRERGRREVNPFENDEAEDLSISEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMREQYNQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGIRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLDSDKRSHLMDLLHAQRETGIDGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNLSMAKPLADLMQEANQEVPAWLTRYAARATYSGGHRNRRSGGSRFGGRDFRKDGSLNKGTTDFHGGGTGGGYGNYGGGYGQGVTSAWD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02825 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Pste4g02825 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 525 IPR027417 -
Pste4g02825 609 SMART helicmild6 427 508 IPR001650 -
Pste4g02825 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 369 IPR014001 -
Pste4g02825 609 MobiDBLite consensus disorder prediction 563 579 - -
Pste4g02825 609 Pfam Helicase conserved C-terminal domain 394 508 IPR001650 -
Pste4g02825 609 MobiDBLite consensus disorder prediction 102 116 - -
Pste4g02825 609 MobiDBLite consensus disorder prediction 78 97 - -
Pste4g02825 609 MobiDBLite consensus disorder prediction 1 122 - -
Pste4g02825 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 122 547 - -
Pste4g02825 609 FunFam ATP-dependent RNA helicase RhlB 372 551 - -
Pste4g02825 609 Gene3D - 109 371 IPR027417 -
Pste4g02825 609 Gene3D - 372 552 IPR027417 -
Pste4g02825 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 547 IPR001650 -
Pste4g02825 609 MobiDBLite consensus disorder prediction 1 23 - -
Pste4g02825 609 CDD SF2_C_DEAD 381 517 - -
Pste4g02825 609 SMART ultradead3 173 384 IPR014001 -
Pste4g02825 609 FunFam Probable ATP-dependent RNA helicase DDX4 116 371 - -
Pste4g02825 609 Pfam DEAD/DEAH box helicase 178 358 IPR011545 GO:0003676|GO:0005524
Pste4g02825 609 CDD DEADc_DDX3_DDX4 155 375 IPR044763 GO:0003724|GO:0005524
Pste4g02825 609 MobiDBLite consensus disorder prediction 553 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02825 Pste-Chr4 19873035 19881257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02825 152 540 Eukaryotic Initiation Factors Gene Family AT3G19760 30.591 1.75e-59 202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02825 4 19873035 19881257 Pste4g02825 4 19873035 19881257 ECH