LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g02820	GAAAAGGCAAAAAAACCAAAAAAAGAAAGAAAAAAACAAAAAGAGCGTTTTACTGAGCGCATCGTGCAAATCAACCGCCATTACATAACACTCACTCTCCTCACTCTGCTCCCTCTCTGCTCTTCTTCCTCCACATCGGAGAAAACCGATTCGTTCTTCTCCGTTAGGGTTTAGGTTAGGGTTAGGGTTAGGGTTCCGAGTTTCCCTTAATCCAATCGTGCAGCGACATGGGCGTCAATTCGTTGCCCTCTGCGGAATTGAACCTCGATCTGGATGAACAGATCTCGCAGCTCATGCAATGCAAGCCGCTCTCCGAGCACCAGGTTAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTGATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCCGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACTCTTCTTGTGGCACTGAAAGTGCGGTATCCTCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATCACTCAAGTATATGGATTTTATGATGAATGCCTCAGAAAGTATGGTAATGCTAATGTTTGGAAGATCTTTACAGACCTTTTTGATTTCTTTCCATTGACTGCGTTGGTTGAGTCTGAAATATTTTGTTTGCATGGTGGGCTTTCACCTTCGATTGAGACTCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCAATGTGTGATCTATTATGGTCTGACCCAGATGACAGGTGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACGTTTGGCCAGGATATATCCGAACAATTTAATCACACAAACAAGCTCAAGTTAATTGCTAGAGCTCACCAGCTCGTTATGGATGGATTTAACTGGGCTCATGAGCAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTATCGATGTGGGAACATGGCTTCCATTTTGGAGGTTGACGATTCCAAGGGCCACACATTTATCCAGTTTGAACCTGCTCCAAGGAGAGGAGAACCTGATGTCACCCGCAGAACACCTGATTACTTCCTATGATGTTGCTGTTGCATATCATACTGTTGTCAGTTACATCTCATTCTGCACAAATTTCGTTAGTTTGTGCATCCTCATCCTCGTTGATGAGATTGCTATAAGCACTTTAAATCTTTGGGTATGCCCTCCAAACTTCTCTGGTGATTGCCCAATACCGCTTTGATGTAAATTGGGCAGGTAACATTACAGTTTTTTGTGACGCTCTAGATGACGGCCATGTCAGAATATGTATTATGCCGGCGAAGAAATGTGGATATTTTTTTTGTTTGTGTTTCCCCGTCTCTAGAAGCAATTACTGGGATTTTATATGTTATATTGATTTGCTTTGCTATCTATCAATTTTCAGTAAAAGTTGCATGATAATTTAG	1537	0.4196	MGVNSLPSAELNLDLDEQISQLMQCKPLSEHQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNKLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFEPAPRRGEPDVTRRTPDYFL	314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g02820	314	PANTHER	SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED	14	314	IPR047129	GO:0004722
	Pste4g02820	314	CDD	MPP_PP2A_PP4_PP6	14	298	-	-
	Pste4g02820	314	Gene3D	-	8	314	IPR029052	-
	Pste4g02820	314	SMART	pp2a_7	28	298	IPR006186	GO:0016787
	Pste4g02820	314	PRINTS	Serine/threonine phosphatase family signature	153	179	IPR006186	GO:0016787
	Pste4g02820	314	PRINTS	Serine/threonine phosphatase family signature	56	83	IPR006186	GO:0016787
	Pste4g02820	314	PRINTS	Serine/threonine phosphatase family signature	182	209	IPR006186	GO:0016787
	Pste4g02820	314	PRINTS	Serine/threonine phosphatase family signature	238	258	IPR006186	GO:0016787
	Pste4g02820	314	PRINTS	Serine/threonine phosphatase family signature	260	276	IPR006186	GO:0016787
	Pste4g02820	314	PRINTS	Serine/threonine phosphatase family signature	118	142	IPR006186	GO:0016787
	Pste4g02820	314	PRINTS	Serine/threonine phosphatase family signature	85	112	IPR006186	GO:0016787
	Pste4g02820	314	ProSitePatterns	Serine/threonine specific protein phosphatases signature.	119	124	IPR006186	GO:0016787
	Pste4g02820	314	FunFam	Serine/threonine-protein phosphatase	8	314	-	-
	Pste4g02820	314	MobiDBLite	consensus disorder prediction	295	314	-	-
	Pste4g02820	314	Pfam	Calcineurin-like phosphoesterase	56	247	IPR004843	GO:0016787
	Pste4g02820	314	SUPERFAMILY	Metallo-dependent phosphatases	13	299	IPR029052	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g02820	Pste-Chr4	19834391	19841416	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g02820	20	244	Calmodulin-binding Proteins	AT5G63870	34.457	2.85e-33	122