Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02793 TCAAAGAGAAAAAAGGTTGCTCTGAATGTAGAAAATTCAGAAAATTTACCTTCAGGCCAAGGAATATCTAACAACAAGGTATCTCTTTATCACTGTAATTATTGTAACAAAGATATTTCGGGGAAGATTCGCATCAAGTGTGTTGTGTGTCAAGATTTTGACCTCTGTATAGAGTGCTTCTCTGTTGGTGCCGAGGATAATCTATCTTTCCCACTTTTATGTCCAGATTGGAATGCAGACGAGGAGATGCTACTTCTAGAGGGCATTGAAATGTATGGATTTGGAAATTGGAATGAAGTTGCAGAATATGTTGGAACAAAAAGCAAATCCCAATGTATTGACCACTATAATGCTGTATATATGAATTCCCTATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGAGGAACTCTGTGCCATGGCGAAGGGACATGAAGCCAAGAAAGAATTTTCTCCTACTGCAGAGCTTACTCTGAAAGAAGAACCTCCCTTCACTGATGGGCTTAACTATGAAAATTTGAAGAAGGCAGAAATCAATAATCAAACAATGTCTGAGTTAACCTCAGCATGTGGCAAAGCTTACTCAAGTACAATTAAGAAGACTTCCAACGTGAGCCAAAATAGTGATGGAGTTAAGGTGGAAGAGTCTCAAGCAGATCGGAGCATTGGAGAAAAGAAACTTAAATTCTCTGGGGAAGATAGGCCTTCTATGACAGAGTTGACTGGATACAGTTTTAAGCGAGAGGAATTTGATGTTGAATACGACAATGATGCAGAGCAAGTGTTGGCAGATATGGAATTTAAGGACACTGATACTGAAGCTGAACATGAAATGAAACTGCACGTGCTTCATATCTACTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGAATTTTATACTTGATAGAGATTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAACTTAAAATATGTCAGCGTTACAGGGTCTTCATGCGGTTTCACTCAAAAGAAGAGCATCAGGATTTGCTAAAAAATATTATTGAAGAACACAGGCTTAACAAAAGAATACAAGATTTACAGGAAGCTCGACTTGCTGGATGTGTAACTGCTGCTGATGCTTATCGATTTATTGAACAAAAGAGGTCGAAGGAAGCTGAACTGAGTGCCTGTAAAGAAAGTGGTCAGATTGGAACAAGTGCTAAGACATTACAGAGGCCAAATTCTCTCAAAGGAGAAGTTGGTAGTAGTCCACGAGGCCTTCAAAAGGGGACTACAGCTTTATTTGCTGGAGCCAAGGAATCACCTACTGCCGTTCAAGCCATTACAAGGTCGCTAGAAGAGTGGGACATTAGTGGATTTGTAGGGGCTGAATTACTATCTGAATCTGAGAAAAAGCTTTGTAATGAGATCAGAATACTACCCTCACACTACCTTAGCATGTTGCAGACCATGTCATTAGAAATTTCAAAGGGCAGTATGACCATGAAATCTGATGCATATAAACTGTTTAAGGTGGAGCCAAGCAAGGTTGATAGGGTGTACGATATGCTTGTTAAAAAAGGAGTTGTACAAACA 1587 0.3945 SKRKKVALNVENSENLPSGQGISNNKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAEDNLSFPLLCPDWNADEEMLLLEGIEMYGFGNWNEVAEYVGTKSKSQCIDHYNAVYMNSLCFPLPDLSHVMGKSREELCAMAKGHEAKKEFSPTAELTLKEEPPFTDGLNYENLKKAEINNQTMSELTSACGKAYSSTIKKTSNVSQNSDGVKVEESQADRSIGEKKLKFSGEDRPSMTELTGYSFKREEFDVEYDNDAEQVLADMEFKDTDTEAEHEMKLHVLHIYSKRLDERKRRKNFILDRDLLYPDPFEKSLLPEELKICQRYRVFMRFHSKEEHQDLLKNIIEEHRLNKRIQDLQEARLAGCVTAADAYRFIEQKRSKEAELSACKESGQIGTSAKTLQRPNSLKGEVGSSPRGLQKGTTALFAGAKESPTAVQAITRSLEEWDISGFVGAELLSESEKKLCNEIRILPSHYLSMLQTMSLEISKGSMTMKSDAYKLFKVEPSKVDRVYDMLVKKGVVQT 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02793 529 ProSiteProfiles Zinc finger ZZ-type profile. 27 80 IPR000433 GO:0008270
Pste4g02793 529 Gene3D - 443 528 IPR036388 -
Pste4g02793 529 ProSiteProfiles SWIRM domain profile. 443 529 IPR007526 GO:0005515
Pste4g02793 529 ProSitePatterns Zinc finger ZZ-type signature. 32 59 IPR000433 GO:0008270
Pste4g02793 529 SUPERFAMILY Homeodomain-like 70 124 IPR009057 -
Pste4g02793 529 SUPERFAMILY Homeodomain-like 443 528 IPR009057 -
Pste4g02793 529 SUPERFAMILY RING/U-box 30 66 - -
Pste4g02793 529 ProSiteProfiles Myb-like domain profile. 77 120 IPR001005 -
Pste4g02793 529 MobiDBLite consensus disorder prediction 404 423 - -
Pste4g02793 529 Gene3D - 23 69 IPR043145 -
Pste4g02793 529 PIRSF Txn_adaptor_ADA2 18 529 IPR016827 GO:0003713|GO:0006357|GO:0035065
Pste4g02793 529 SMART zz_5 26 70 IPR000433 GO:0008270
Pste4g02793 529 Gene3D - 72 122 - -
Pste4g02793 529 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 30 524 - -
Pste4g02793 529 Pfam Myb-like DNA-binding domain 76 117 IPR001005 -
Pste4g02793 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 124 IPR017930 -
Pste4g02793 529 FunFam Transcriptional adapter 2 70 122 - -
Pste4g02793 529 ProSiteProfiles SANT domain profile. 72 124 IPR017884 -
Pste4g02793 529 CDD SANT 77 117 IPR001005 -
Pste4g02793 529 SMART sant 73 122 IPR001005 -
Pste4g02793 529 FunFam Transcriptional adapter 2 444 528 - -
Pste4g02793 529 Pfam Zinc finger, ZZ type 30 61 IPR000433 GO:0008270
Pste4g02793 529 CDD ZZ_ADA2 30 65 IPR041983 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02793 Pste-Chr4 19684829 19691239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02793 1 526 EF-hand Containing Proteins AT3G07740 52.632 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste4g02793 Myb_DNA-binding 3.2e-12 CL0123