Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02787 TTTCAAGCTTCTGTTCTTCTCGGCGAGTTTGAAGAGAGAGCAGCGGCTGCTACCCTACTTTCTACTTCTCCTTTCCTAACTTTCAGGATGGAATCTCAGGCGAAGCATGCTATTGTTGTTAAGGTCATGGGTCGTACTGGGTCTAGAGGACAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAGAACCGTCACATCATGAGGAATGTGAAGGGACCAGTCAGAGAGGGAGACATTCTCACCCTACTTGAGTCTGAGAGAGAAGCAAGGAGGTTGCGTTAAAGGGTCTCTTGATGGTTTGTCTCAGTATTCAGTAAAACAATGCTGTTTTGTGGTAGTTGTTAGCAGACATCTTATTTTATATTTTATTGTTCTGGATCTACATTATACTCTTATTACGACTTGAGTTTTGATGTTATTGAGCTGGCTGAGTTTTGAGTAAAACTGTGCTTTGAATTTATATATGATTATGTTACGATTTGTGATATAGTTAGTGTGATATAATTTTGGG 514 0.4008 FQASVLLGEFEERAAAATLLSTSPFLTFRMESQAKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02787 94 ProSitePatterns Ribosomal protein S28e signature. 85 93 IPR028626 -
Pste4g02787 94 CDD S1_S28E 35 94 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pste4g02787 94 Hamap 30S ribosomal protein S28e [rps28e]. 30 94 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pste4g02787 94 Gene3D - 28 94 IPR012340 -
Pste4g02787 94 Pfam Ribosomal protein S28e 33 93 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pste4g02787 94 SUPERFAMILY Nucleic acid-binding proteins 30 94 IPR012340 -
Pste4g02787 94 PANTHER 40S RIBOSOMAL PROTEIN S28 30 94 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pste4g02787 94 FunFam 40S ribosomal protein S28 29 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02787 Pste-Chr4 19647731 19649707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02787 30 94 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 2.12e-35 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02787 4 19647731 19649707 Pste4g02787 4 19647731 19649707 ECH