Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02769 CAACTTCACAACACAGCACTCTTAGCAGAGCAGAGAGCCAAAAAAGTAAGAGAGAGAAAGAGAACTTAAAGGGTCTCATCTCATCGCATGTGAGTCATATCTGTTGTTCTCTTCAAAAAGTTCAGCTGCTTCTTCTGCGACTCTTTCTCTGTTTTCAAGTTTTTCATCAAAATAAAAAAAAAATATTTTTCTGAAAAAGCAAAGCCCTTTTGCTTACCGATCTTGTTCCATGTCTTCCTTGCTTTGAGAATTCAGCTTCTACATCATCAGATAAAGAGGAGGAACTTTTGTTTTGTCAGTGGAGGATATTGTGGTTTGTAAAGACTATTACTAGGTGGAGATTCCTTAAGAGAAAAAAGAGTCTGAAGATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGATGCTGCATGTTTATGTTTGTCATGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCAAAGCGTCATTCACGGACCCTTTTGTGTGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGCTGAAGAGAAAGTTTCACTCTGTCAGAATTGTGATTGGTTAGGTCATGGCAACTCCACATCTTCTTCAACACATAAGAGACAAGCAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAACTGTCTTCAATATGGTCATTTGTGTTAGATATTTCTGCCGTTAGTGAATCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAACAAGAGTATTGGGGTTCCTCCAGAAAACCAGAATGTGTCTGGTTCAGATCAAGTTACCTATCTACCTGCTTTGGGCAAGTCTTTGGTTGGTACGTCTTCAATGCCTGAGTCAAGCTCCAAACCTTGTACTCTGGACCAGCCAGCTGGACCTGCCAATCAATGTCTGCCAAAGTTATACTGCCCTGCTACAAAATTCCCTGCATTATGCGAAGATGATAATCTATATGATGATTTCAACATGGATGAAGTGGATCTAGATCTTGAGAACTATGAAGAACTTTTTGGTGTGGCTCTCAGTCATTCTGAAGAGCTTTTCGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAGGACATGTCTGCAGGAGATTCCAATTGTCAGGATGCTATTGCTGCAGAGGGGTCATCAGTGGGACTGGCCAATGCAATGCAACCAGCTTGCAGCAAAGCAGCATCTGCAGATTCCATTTTGAGCACTAAAACTGAACCAATTCTTTGTTTTACGGGAAGGCAAGGCCAATTAAACCTTTCGTTTTCTGGTATCACTGGAGAGAGTAGTGCAGGAGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAGCTCCTTGTCCTGAGAATTCTGTACAATCTGCCAACCGCAGTAATGCAGTCATGCGCTACAAGGAAAAGAAGAAAACACGGAAGTTCGACAAAAGGGTGAGGTATGCCTCTCGCAAGGCAAGGGCTGATGTCAGAAGGCGTGTGAAAGGCCGGTTTGTCAAAGCTGGTGATGTCTATGATTATGATCCTTTGAGCACAACCAGAAGCTGCTGAGTGTACAACTTTTAACCATGTTTTATAAAAGGAAACAGTGATATAGCTGCAAAAGAAAAAAGTTACCTGAAAAATGGATGAAATTTGATGCATTCTTTGTCCCTGCAATGACAAGCTTGTCTGATTTTATCACAGGAGGGGCCCTGATGTTCTTCAAGGAGGAAAAGGCTGTGTTCAGTGTAAGCTCTGGATCAGGAGCTGACTCTTTGTCCTTCACTGTGAAGGTTGTCCAAATTGTGATGTTATCACAAAGTGCCTCCTTCAGGCAATGTGTTTTGATTGCCTTTCTATTAAGCTTGGCAATTTCAGCTGCATAATTATTTTCCAAGAATTCAAAAACCTTCTAAGGGTCTCTCTGGGTAATTTTTTCTAGAAGTACTCCTAGGAGGAAAAAATACAAAAAAAGTCAAAACATTTCCGTATATGGAGAAGTTTTTTTTGACTTTTTTCTTTGTATTTTTTTCCTTCTAGAAGTGTTTCTAGAGAAGTTTATCTAAATAGACCTAAGTTCTTTGGCCTGAACCATACTTCGATGTTTGTGATGTGGTCATGTATACTCCTCTCTTCTATAGTCACATGTACAAGTGCTTCAGATGGCATGATAAGTGGCTTCATTTAACAGTTCCAGGTAATTAAACTACAAAGCTTGTTAATTATAATATTTGGCCTCTTGGCTTTGACATGTGTATAGCACACAATCTACATTGATGCAGTTAGATGTATAATTTTGCCCTATCCTTTTGATGTAATCAGACAATTGTAAATTCAATGCCCCGTTGTATAGAATAGGATACTATGCATGTTGATGATGGTAGTCTATATTGGACATGCACTAATACAAGTTTTGTTTGACTTGGTAATTTATCTGGGTGCGTTGATGCACTTCAATTGTATGGTCTATTTACCTTAATTGTAAATAACAAATTCGAT 2531 0.3987 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRCAEEKVSLCQNCDWLGHGNSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLDISAVSESTCEQELGLMSINENNKSIGVPPENQNVSGSDQVTYLPALGKSLVGTSSMPESSSKPCTLDQPAGPANQCLPKLYCPATKFPALCEDDNLYDDFNMDEVDLDLENYEELFGVALSHSEELFENGGIDSLFGTKDMSAGDSNCQDAIAAEGSSVGLANAMQPACSKAASADSILSTKTEPILCFTGRQGQLNLSFSGITGESSAGDYQDCGASSMLLMGEPPWLAPCPENSVQSANRSNAVMRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02769 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pste4g02769 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Pste4g02769 410 CDD Bbox1_BBX-like 47 90 - -
Pste4g02769 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Pste4g02769 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 397 - -
Pste4g02769 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Pste4g02769 410 CDD Bbox1_BBX-like 4 47 - -
Pste4g02769 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Pste4g02769 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02769 Pste-Chr4 19515465 19522160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02769 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 57.109 3.58e-157 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste4g02769 CCT 3.9e-16 CL0281