Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste4g02762 | AAAGAAAGGCAGTTAAAGTGGAAGTCCAAAGCGAATTGTGTTGGGAAAGGGGTAAATAATAACCCTAGCGATCTCCCACACTTGTCTTCTGGTTAGTCTGTATCCGCAGCTTGCATTGCAGTTTGCAGATCTCGATCGATCTGCAACCATGGCTTCCAGAAAATCCGACAACCCTCATTCCGGCGACGGCGCCAGTCCCGGCAAAATCTTCATCGGAGGCTTAGCTAAAGACACAACCCTAGAGACGTTCGTGAAGTACTTCGAGAAGTACGGTGAGATAACGGACTCCGTTATCATGAAGGACCGTCACACGGGTCGACCCAGGGGCTTCGGTTTCATCACCTACGCCGATCCCTCCGTCGTTGACCAAGTCATTCAAGAGGACCACGTCATCAATGGCAAGCAGGTCGAGATTAAGAGGACCATTCCCAAGGGTTCGTCGCAGGCTAATGACTTCAAAACCAAGAAGATTTTCGTGGGGGGTATTCCAACATCAGTATCTGAAGATGAGTTCAAGAATTTCTTCTCCAAGTATGGGAAGGTGGTGGAGCATGAAATTATACGGGACCACACAACAAAGCGTTCTCGGGGGTTTGGCTTTATAGTTTTTGACAATGAAAAGGTTGTGGATAATATTTTGGCGGATGGGAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTCCTGCATTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGTTTTGGTGGATTTGGCGATTCTTATGGAAGTTTTGGTGGTAGTGGGTATGGTCCTGGTTCTTATAGGTCACTTGGAGGGTTTGGGGGTAGGCTTGGTGATTATGGTGGTTACGGGGGTGGAGAGGACTTTGGTGGTAATTTTGGGGGTTACGGTGGCACTGGTGCTGGTGGATATGCTGGTTTTCGTGGAGAATCGTCGTTTGGCTACTCTAGTCGCTATGGATCGTACATGGGTGGTCTTGGTGCTGGTTATAGTGGCGGTGGATTAGGTGCATATGGGCGGGGAGGTGGGGCCTATGGAAACTATGGTGGTCCAGGTGCTGGTGGGGGTTATGAATCAGGCACCGGTGCTGGTTATGGAGGAGCAGGAGGTGGAGGTTATCCCAGTAGGGGAAGCTATGGTGGCAATAGTCGTTACCATCCTTATTCAAGATAGTTTTTTTACTAAGCTTTGCAATAGAATGTGCATGCAGGTTTAAGCATTTTCTAGACACAAGGCACTTACTCCAGGTGGCCACTTTCTAGAAGTCCGAAGAACCACTAGCATGTCTGTTTTATCATATGCTTAGACAACAGAAGGTAGAACATCATCAATCTAGAGCTTTCTGAGCATCAATCTAGAGCTTTCTGAGTATCATCAATCTAGAGCTTCCTATCAGTTATCAGCCTATATGACGTTAGATAGGCTCATTATATTTTATGTGATGTTCAGATGTTTGAAAGTTAGACTGCACAATTCTGGATATGAAATTTAGTGAGAATCGTGGAGTTGTGTGAATGTGTATTAATGTAGGTCATACTTACTAGACATTTGTTTGAAAGAGCACTTGTTCTTGATCTTTCCTTTAGTTATGTTTGGTTAGCCTATGTTAAAGATGCTGCATAACCTTTTCAGGTTAAACTAGTTACTACAGTTGCTGTGATTATTTATATGCCTAGTTAGATTATGTCCATGTGATAGATCTTAATTAGTCTCGTATGGTTTCTGAAGGCACTTGTCTTCCTAAAGGGGTTGTTTTGACGGCATTCCATGTTAGCAGTTGTAAATTGGATCATAACAGAGAAAGGCATTGATCTGAGTCTTTCTTAGATTTTAGTGTTTGGTATTGGAAGGTAGCTGTGTCCTCCATATATATAGGGGTTTCAGGGAGAGTTAAATCAGAAACTACATGATGACGCCAATTAGACATTTTATACCTTGTGATTGCGCATGTACAGTGTCTAGGGAGCTGTGTTTCAAGAAACTATGCTTAGGTGCTTACTGGTAGGGATGGCAAAAATGATCTCCGTACCTGTGGATTAAAACATTAAAATACCTGCATGGGTAATTTAGATGGGTACCCTTTACCCTCGGCTACCGGGTTTTTTCCCCTTACTTGCTCCTTAATGGACACGAGTACGAATATCATAGTACTTATATCTGCGGGTATCTATTATCTGCTAAATTAAAATACTAC | 2228 | 0.4372 | MASRKSDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQEDHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNPASLPAFASDSRARSYNDGFGGFGDSYGSFGGSGYGPGSYRSLGGFGGRLGDYGGYGGGEDFGGNFGGYGGTGAGGYAGFRGESSFGYSSRYGSYMGGLGAGYSGGGLGAYGRGGGAYGNYGGPGAGGGYESGTGAGYGGAGGGGYPSRGSYGGNSRYHPYSR | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste4g02762 | 352 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
| Pste4g02762 | 352 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 98 | IPR035979 | GO:0003676 | |
| Pste4g02762 | 352 | SMART | rrm1_1 | 19 | 90 | IPR000504 | GO:0003723 | |
| Pste4g02762 | 352 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
| Pste4g02762 | 352 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 17 | 98 | - | - | |
| Pste4g02762 | 352 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 80 | IPR000504 | GO:0003723 | |
| Pste4g02762 | 352 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 168 | IPR000504 | GO:0003723 | |
| Pste4g02762 | 352 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 7 | 352 | - | - | |
| Pste4g02762 | 352 | Gene3D | - | 97 | 218 | IPR012677 | - | |
| Pste4g02762 | 352 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 94 | IPR000504 | GO:0003723 | |
| Pste4g02762 | 352 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 99 | 224 | - | - | |
| Pste4g02762 | 352 | Gene3D | - | 18 | 96 | IPR012677 | - | |
| Pste4g02762 | 352 | SUPERFAMILY | RNA-binding domain, RBD | 106 | 259 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste4g02762 | Pste-Chr4 | 19484954 | 19488064 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste4g02762 | 4 | 169 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.630 | 5.96e-13 | 68.2 |