Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02748 ATGGAGATGAAGAAGATGAGCAACGAGCGTAACCTTCAGGTGACGTTCTCGAAGCGGCGCAATGGGGTTTTCAAGAAAGCGAGTGAGCTTGCAACGCTTTGCGGTGTGGACATAGCTGTGATCATGTTCTCACCTGGTAACCAAGTTTTCTCCTTCGGAAGCCCTAGCGTGGATTCCGTCATCCAACGCTATACAGCGCAGGGCCCACTTCCCGTCCTCACCCATGACCTCAACCAGGCCCAGTCCGCCACCGATGAAGCTGACCTCCATGCGCACCTCAACCACTTGTCGCACCAGATTGCCTTTGAAAAGAAACGTTCTCAGGATTTAAACCATTTTTTGAACGCCACACAGGATCACTTCTGGTGGGCTGCCCCCATTCATACCATGAATTACTCCCAATGCCTCCACTTCAAGAACATGCTCCACAATTTAAAGACCTATATAAACCAAAGTCAATCATTTGGGTCTGATTGATAGGAATGTCTGGTGCCACTGTTGACAACATGCATGGATGTCCACAGAGAACGACCCACTTTTGTCATTTTTTCTTCCTTCAAAAGAGATGCCCTATTGATGATCCC 584 0.4863 MEMKKMSNERNLQVTFSKRRNGVFKKASELATLCGVDIAVIMFSPGNQVFSFGSPSVDSVIQRYTAQGPLPVLTHDLNQAQSATDEADLHAHLNHLSHQIAFEKKRSQDLNHFLNATQDHFWWAAPIHTMNYSQCLHFKNMLHNLKTYINQSQSFGSD 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02748 158 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Pste4g02748 158 CDD MADS_MEF2_like 2 64 IPR033896 GO:0000977|GO:0045944
Pste4g02748 158 Gene3D - 8 80 IPR036879 GO:0003677|GO:0046983
Pste4g02748 158 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Pste4g02748 158 FunFam Agamous-like MADS-box protein AGL62 8 72 - -
Pste4g02748 158 PANTHER MADS BOX PROTEIN 2 149 - -
Pste4g02748 158 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Pste4g02748 158 PRINTS MADS domain signature 33 54 IPR002100 GO:0003677|GO:0046983
Pste4g02748 158 PRINTS MADS domain signature 18 33 IPR002100 GO:0003677|GO:0046983
Pste4g02748 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02748 Pste-Chr4 19410174 19411340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02748 1 149 Type I MADS-box Gene Family AT5G60440 46.405 4.01e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste4g02748 SRF-TF 4.2e-24 No_clan