Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02735 ATGGAACTCAATGCTTCAATTAAAGCAGGCAAAGAAGATAGTGTTACAAAAGAGGAAGCAAATTTAATGGTAGAGTTGAGTGAAGGCACTAGCAATGGGATGGAGCAACTTGAGGCACCGAATGAGATATCAGAAAAAGAAGACTTACCAAAAGGTGTTAAGGACACAAAAGACATAACTTTAGCCTCCAATATGTCAATTCAAGAAAAAGCAAAAGACATAGCAAAAAATAAATCAAGCAGTAGAAATGCAAGGTTCCTTCCCTTTCTTGAGCCCCTTTTCTTTTCTGGGCCTTTGCCAATTCTCAATGGAGGAGACTTCGTAGAACTTATTAGGGTTCCAGAAATGGAAGGCAAGACCGAAAGTCATATGACATCGGCAGCAGCCTTTGTGGAGGGGGGAATTCAAGAAGCTTGTGATGATTCTTGTAGCATATGTCTTGAGGATTTTTGCAAAAGTGATCCTGCCACAGTCACTAATTGCAAGCATGACTTCCACCTGCAGTGCATTCTTGAATGGTATTTACTGGCTATTGTTTTATGTAGGTGTCAGCGAAGTTCTCAATGCCCTATGTGTTGGCAGCCAATCAGCTTGAAGGATGCTACCAGTCAAGAACTGCTTGAGGCAGTAGAGCTGGAGAGGAACTTGAGGGATACTCCATCAAGAAATGCTGCGATTTTTCATCATCCAACACTTGGTGGTTTTGAATTGCAGCAATTACCCATGGGTGTGAATGAGGTTGATATTGAAGAGCGAATAATTCAACATTTAACTGCAGCAGCAGCAATGAGGAGATCACACCACCTTGGCCGGAGGGAAGGCCAACGAACTAGGTCATCTGCTCATGGCCGGCCACACTTCTTAGTATACTCAACTCAGCCTAGTGCACCTCCATCAGCTTCTGGAGGGGGAAGTGAACCAGCTGCAATTCCTGTAGGAAGTCCTTCTATCCCACTTGCATTTGATGGAACTGAGCAATCATCACCCCAGCAGATACCCCAATTTCAAACTCAGAGTTCTTCTTTCACTCCTGGCTCTACTGTCCAGGCAACAGATCTTCAAGGAATTCACTATAGTGATAGAAGGTTTGCCTCTCGTTCTTTGCCTGCAAGCCAAGATAGAGCTCAGCCATCAGAACAATCTTTCTCTGATTCTCTGCGTTCCAGATTTAATGCAGTATCCATGAGATACAAAGAATCAATTTCGAAGGGCACAAGGGGATGGAAGGAGAGGTTGTTCTCTCCAAATTCTTCTATGTCAGAACTTGGTTCAGAAGTTAAGAGGGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAAAATAATATGGCTGCTGGCACTTCTTTATCAAATAATTTTGTGAATCGTTCCATCGCAGAGACAAGCAACCAAAACAATGTGGAAGCTCGTGAAGAGAACTCTTTGCGTGACCATAGTACTCCTGCTACTTTTTCTGCTAGCTCAGATTCAAAATGAGCTCTAGTTTGCTTCTATGAATGCATCTTTGCTCAGCATATCATGTTTGAAGGGTAACTGTTTGCTCAGACATGACATGATGAGGAATATATGCTCATGGCAGTTATTGGATTTCAATAAAAATAATAGGATCTGAGACCCCTGTGTCTAAAGCTAAAAACTCTTGCTTTTATGTATATATATTATACATATACCGGGAACTGTAGGGAGTAAGTATTTAAGGAGTAATCCAAGGGAGAGTCTTCTGAAATTCCATCAGACTTGTGTCCATAAGACCATAATCTATCCTTGTGATTACTTTTTGGAGTCAATGAAAATATAGATCAAGGTGGCAACTCGAGTTCTTTGTGTTTCTGCTGTACTTGAACCTTGATTAAGCTAAAACTTTGTTTCGAAATTAACATTAGGG 1909 0.4159 MELNASIKAGKEDSVTKEEANLMVELSEGTSNGMEQLEAPNEISEKEDLPKGVKDTKDITLASNMSIQEKAKDIAKNKSSSRNARFLPFLEPLFFSGPLPILNGGDFVELIRVPEMEGKTESHMTSAAAFVEGGIQEACDDSCSICLEDFCKSDPATVTNCKHDFHLQCILEWYLLAIVLCRCQRSSQCPMCWQPISLKDATSQELLEAVELERNLRDTPSRNAAIFHHPTLGGFELQQLPMGVNEVDIEERIIQHLTAAAAMRRSHHLGRREGQRTRSSAHGRPHFLVYSTQPSAPPSASGGGSEPAAIPVGSPSIPLAFDGTEQSSPQQIPQFQTQSSSFTPGSTVQATDLQGIHYSDRRFASRSLPASQDRAQPSEQSFSDSLRSRFNAVSMRYKESISKGTRGWKERLFSPNSSMSELGSEVKRELNAKIASVSRLMERLETRENNMAAGTSLSNNFVNRSIAETSNQNNVEAREENSLRDHSTPATFSASSDSK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02735 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 209 IPR013083 -
Pste4g02735 499 SMART ring_2 143 192 IPR001841 -
Pste4g02735 499 MobiDBLite consensus disorder prediction 320 347 - -
Pste4g02735 499 MobiDBLite consensus disorder prediction 365 384 - -
Pste4g02735 499 Pfam RING-like zinc finger 143 170 IPR001841 -
Pste4g02735 499 MobiDBLite consensus disorder prediction 450 499 - -
Pste4g02735 499 ProSiteProfiles Zinc finger RING-type profile. 143 192 IPR001841 -
Pste4g02735 499 MobiDBLite consensus disorder prediction 450 477 - -
Pste4g02735 499 MobiDBLite consensus disorder prediction 264 347 - -
Pste4g02735 499 Coils Coil 427 447 - -
Pste4g02735 499 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 78 200 - -
Pste4g02735 499 SUPERFAMILY RING/U-box 135 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02735 Pste-Chr4 19330261 19337284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02735 140 200 C3H Transcription Factor Family AT4G00335 37.705 5.34e-09 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02735 4 19330261 19337284 Pste4g02735 4 19330261 19337284 ECH
Pste5g02499 5 17520600 17524456 Pste4g02735 4 19330261 19337284 PCT