Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02716 TGAGTTTTTTGTTTATATATATTTATAACATTTTCTCTCAAACTTTTCATTCTTGAAGCCATCACTGAACACCTTATTTGTCTTCTCCTCCATCCTTCATGATTCATCATTCATGGAGGAACCCTTACCAGTTTCCAATCCCCTAACGAAGCATCATCCTCATCAACTGTAACGCACGTTGTTTTCGCGAAACAAACGTACACTTTCACAATACTGAAAGCCAATCAAGAACAAGAAGAAGAAAGAAGGGATTAAACAATCAAGTTGTGTTTCTTATTTAAGCGCAACTGTCCATTACGGTTTTACTACTCCGAGAAAAAACCAAGGAATTCTTTAAATGCCAAACACGTTTGCGTTTCGCCTTTAGCCACCGCGCAATCACTTCAGGTTTCACACGAGGTTGAGCAGCAAAGAGAAGTCACGGAAAATGGTGGGTTTCTGGACCGTGTTTTGTGGGGAATCTGGTTGTTCAGAGGCTGGACGAATGCCATGCAGTTACAACTTTAGGCTTCTCTTTGATTCTTCCACTTGTGTCAACCATTTGTTGATGTCTTGCTTTGATGTATTGCTGCTTATCATTCTTGTATTCATAATGATCCAGAAGTCAATATTAAAACCATCTCAGGGTGTATTACAGGTGCAAAGATATTCATATTTTCAGCTAGTTTCTGCTATAGCAAATGGTGCTCTTGGGTTGGCACATTTGTGCTTTGGCATTTGGCTTTTAGAGGAAAGGTTGAGGTTAACGCAAACTTTGCTGCCTCTAAATTGGTGGTTGCTAGAAATCTTTCATGGATTAACTTGGTTCTTAGTGACTATAATACTAAGTCTCAAGTCGAAACAACTTCCAAGAGCATGGTCATGGCTTTTTTCTACTCTAATCTTCTTGGTTTCTGGTATTTTCTGTACTTCATCCTTGTTTTATGCAGTTATTAGCGGAGTGCTATCTCTTAAAATAGCTTCAGATATTCTATCTTTTCTGGGGGCAATATTATTGTTAATATGCACATATAAGGAATCCAAGAATAGGGACACTGACAGAGAAACTGATGGAAGTCTGTATGCCCCCTTAAACGATGAGTCCAACCAAAATGATTCTATTATATATGTAACCCCATTTGCCAACAGTGGATTCTTCAGCAGGATGTCATTTTGGTGGTTGAATCCATTGATGAAAATGGGCAAGGAGAAAACACTTCGGGATGAAGACATTCCAAGGATGGGGGAGGAGGATCGGGCAGAAAGTTGTTATTTTCTGTTTCTGGACCAACTGAACAGACAGAAACAGAAGGATCCATCCTCCCAGCCATCAGTTTTGAGGACAATAATTTTATGTCATTGGAGAGAAATATTAATATCAGGATTCTTTGCATTGCTTAAGGTGCTTGCTCTTTCTTGTGGGCCTCTTCTTCTGAATTCTTTTATATTAGTTGCTCAGGGTCACCAGAGTTTCAAATATGAAGGTTTTGTGTTGGCTATATCACTTTTCTTTGCAAAAATCATAGAATCCCTATCACAAAGACAATGGTACTTCCGCTGCAGACTTATTGGTCTGAAAGTTAGGTCGTTGCTAACTGCAGCCATTTATAAAAAGCAATTGAGGTTATCCAATTCTAGTAGATTGATACACTCTGGTGGTGAGATAATGAATTATGTGACCGTAGATGCGTATAGAATTGGTGAGTTTCCCTATTGGTCTCACCAGACTTGGACAACTAGCTTACAGCTGTGTATCTCACTAGTAATACTTTTTCGTGCTGTTGGGCTGGCCACAATTGCCTCCTTGGTGGTGATACTAATCACTTTGCTTTGCAATACTCCAATTGCAAAGTTACAACACAAGTTTCAAAGCAAACTTATGGTGACACAAGATGAGAGATTGAAGGCTTGTTCAGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTGTATGCCTGGGAAGCAAATTTTAGAAGTGTTATAGAGAGATTAAGGAATGAGGAGTTCATATGGTTGTCTAAAGTGCAACTAAGAAAGGCATACAACACCTTTCTCTTTTGGTCTTCTCCTGTTTTGGTCTCTGCTGCTACCTTTGGGGCATGTTACTTTCTTAATGTTCCTTTACATGCAAATAATGTTTTCACTTTTGTTGCAACCTTGCGCCTTGTTCAAGATCCAATTAGAACCATCCCTGATGTTATTGGGGTGGTCATTCAGGCAAAAGTCGCCTTTACTCGGATTGTAAAATTCCTGGAGGCACCCGAGCTGGAGAGTGCAAATGTCACAAAAAGATGTCTCAATGACAATAAGAGAGGTTCAATTTTAGTCAAGTCTGCTGACTTTTCGTGGGAAGATAATGTATCAAAGCCAACACTGAGAAACATAAATTTGGAAGTTAAACCTGGTCAAAAGGTGGCTATCTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCTGCAATTCTGAGAGAAGTTCCTAATACGCAGGGCATAATACAAGTGAATGGGAAATTTGCCTATGTTTCTCAAACAGCGTGGATACAGACAGGTACAATACGGGAGAATATATTGTTTGGAGGAGCCATGAATACTGAAAAATATCATGTAACACTTCAAAGGTCTTCATTATTGAAGGACCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGAGAGAGAGGAGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCACTGTATCAGAATGCTGATATATATCTCTTGGATGACCCATTCAGTGCGGTTGATGCACATACTGCAACAAATTTGTTTAATCAATACATCATGGAAGGACTTACTGGGAAAACAGTCTTGCTTGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTGTGTTTTGTTGATGTCAGATGGGAAAATCGTAGAAGCTGGTCCTTATCACCATTTGTTGAACTCAAGCAAAGAATTTCAGGACCTTGTGAATGCCCACAAAGAGACTGCTGGTTCTGACGGGCTTTTGGATGTTACTTCTTCCCAGAAACATTCAAATAGTGCTAGAGAAATTAGAATAGCTTATAAGGAACAACCTTATGAAGCATCCAAAGGTGATCAATTGATTAAGCAAGAAGAGAGAGAAAAAGGAGACCAAGGGTTCAAACCATATATACAGTATCTGAATCAGAACAAAGGATATATATACTTCTCTGTGGCTGCTCTTTCTCATTTAACATTTATTGTTGGCCAAATACTGCAAAACTCGTGGATGGCTGCTAATGTTGACAATCCTCGAGTCAGCAATTTGCAATTGATTCTCGTTTACTTGTTGATTGGAGTTATTTCTACAGTATTCTTGTTTATGAGAAGTCTTTTTACAGTTTCTCTGGGCCTTCAATCATCAAAGTCTTTATTTTTACAGCTGTTGAACTCCCTTTTCCGTGCCCCCATGTCATTTTATGACTCCACACCTTTGGGACGGATATTTAGTAGGGTCTCCTCAGATCTCAGCATTGTGGACCTTGATATCCCATTCGGCCTTATCTTTGCCGTGGGAGCTACTATAAATTGCTATGCTAATCTTACTGTTTTAGCTGTTGTTACATGGCAAGTGTTGTTTGTCTCCATACCGATGATTTATTTTGCACTCCGCTTGCAGAGATATTACTTTGCCTCTGCAAAAGAACTGATGCGGTTGAATGGCACAACAAAGTCCTTTGTTGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTAAGGAGGAAGATCGTTTTTTTGAGAAAAATCTCGATCTAATTGATGTTAATGCCAGTCCTTACTTCCATAGTTTTGCAGCGAATGAGTGGTTGATTCAACGATTAGAAACAGTCAGTGCTGTTGTTCTTGCATCTGCGGCACTTTGCATGGTTGTACTTCCACCGGGAACTTTCACCCCTGGTGAGACTTTATCTATTTTTGCTTTTGAAAATGTCACTTTTATTATTCTTTTACTATCTTGCAAATCATGTTTTTCTCCCGCTTGGTCTGATGGAAGTTTCATAATTTCAACATATGATATGATTCCAGGATTTATTGGCATGGCTCTCTCCTATGGCCTTTCACTTAACATATCCTTAGTATTTTCAATTCAAAATCAATGCAATATAGCGAATTATATTGTATCAGTGGAGAGGTTAGAACAATATACGCATATACCAAGTGAGGCACCAGAAGTAATAGAAGGAAATCGTCCTCCTGTGAATTGGCCGTTTGCTGGTAGAGTAGAATTACATGAATTGCAGATACGTTACAGGCCTGATGCACCACTAGTTCTTCGTGGAATGACATGCACGTTTGAAGGAGGGCACAAAATTGGTATAGTTGGCCGAACAGGAAGTGGAAAGTCCACTCTTATAGGTGCTTTATTCCGTCTAGTGGAGCCAGCAGGTGGAAAAATCGTGGTTGATGGCATAGACATTTGTTCTATTGGACTTCATGACTTGAGATCACGTTTTGGTATAATACCTCAGGATCCTACTCTTTTTAATGGGACAGTCAGATACAATATGGACCCCTTATCACAACACACTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAGGCTGTCCAAGAGAAAGAAGAGGAGTTAGACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGCCAGCGGCAACTATTCTGTTTGGGGCGTGCTCTTCTCAGGAGAAGTCGGATATTGGTGCTTGATGAAGCAACTGCGTCAATTGATAATGCAACTGATTTTATTTTGCAGAAAACAATTAGGACTGAGTTTGCAGATTGTACCGTGATTACCGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTGCCATCAGTGATGGGAAACTGGTGGAGTACGATGAGCCAATGAACTTGATGAAGAGAGAAGGGTCACTATTTGGGAAGCTTGTCCAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCTCATTGAAGCTAAACATGTGTTTTAGCATAGCTGGCTCTTATGTTTTTATTTTCAATAGAATTGTGAAGAAGCCAAGAAAGTGTGCTTAGAAGTAGGATGCAAAATTTATTATATTTTGACAAACTATGAGGGCTGAGAAGAGGGAAGGAATTAGAGACTAAGAAAATGGTGCAAAGGTATTAAATGCATTATTTGTAAATTGATGCTTGAGCTGTGAGCTGTTTCACAGTGGAAAGCTTTGATCGTTAAATATTTAGTTAAATAAATATTTTAGAAATGAATGAAGAAGTAAATAAATATTCTAGGTCTGAATTTTATACAATAATTTCTCGGATTGTGTTTCATGAGATTTGAGTAGGTGGCATATGCTTAATTTGTATATTGTCTAATTTTACTTGTGAAATACCCTTTTACTCAATGTCTTTAAGTAGGAGTGT 5427 0.3943 MVGFWTVFCGESGCSEAGRMPCSYNFRLLFDSSTCVNHLLMSCFDVLLLIILVFIMIQKSILKPSQGVLQVQRYSYFQLVSAIANGALGLAHLCFGIWLLEERLRLTQTLLPLNWWLLEIFHGLTWFLVTIILSLKSKQLPRAWSWLFSTLIFLVSGIFCTSSLFYAVISGVLSLKIASDILSFLGAILLLICTYKESKNRDTDRETDGSLYAPLNDESNQNDSIIYVTPFANSGFFSRMSFWWLNPLMKMGKEKTLRDEDIPRMGEEDRAESCYFLFLDQLNRQKQKDPSSQPSVLRTIILCHWREILISGFFALLKVLALSCGPLLLNSFILVAQGHQSFKYEGFVLAISLFFAKIIESLSQRQWYFRCRLIGLKVRSLLTAAIYKKQLRLSNSSRLIHSGGEIMNYVTVDAYRIGEFPYWSHQTWTTSLQLCISLVILFRAVGLATIASLVVILITLLCNTPIAKLQHKFQSKLMVTQDERLKACSEALVNMKVLKLYAWEANFRSVIERLRNEEFIWLSKVQLRKAYNTFLFWSSPVLVSAATFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFTRIVKFLEAPELESANVTKRCLNDNKRGSILVKSADFSWEDNVSKPTLRNINLEVKPGQKVAICGEVGSGKSTLLAAILREVPNTQGIIQVNGKFAYVSQTAWIQTGTIRENILFGGAMNTEKYHVTLQRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNQYIMEGLTGKTVLLVTHQVDFLPAFDCVLLMSDGKIVEAGPYHHLLNSSKEFQDLVNAHKETAGSDGLLDVTSSQKHSNSAREIRIAYKEQPYEASKGDQLIKQEEREKGDQGFKPYIQYLNQNKGYIYFSVAALSHLTFIVGQILQNSWMAANVDNPRVSNLQLILVYLLIGVISTVFLFMRSLFTVSLGLQSSKSLFLQLLNSLFRAPMSFYDSTPLGRIFSRVSSDLSIVDLDIPFGLIFAVGATINCYANLTVLAVVTWQVLFVSIPMIYFALRLQRYYFASAKELMRLNGTTKSFVANHLAESVAGAVTIRAFKEEDRFFEKNLDLIDVNASPYFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTPGETLSIFAFENVTFIILLLSCKSCFSPAWSDGSFIISTYDMIPGFIGMALSYGLSLNISLVFSIQNQCNIANYIVSVERLEQYTHIPSEAPEVIEGNRPPVNWPFAGRVELHELQIRYRPDAPLVLRGMTCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNMDPLSQHTDQEIWEVLGKCQLREAVQEKEEELDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDFILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLMKREGSLFGKLVQEYWSHFQSAESH 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02716 1522 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524|GO:0016887
Pste4g02716 1522 FunFam ABC transporter C family member 10 292 605 - -
Pste4g02716 1522 Pfam ABC transporter transmembrane region 917 1180 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste4g02716 1522 Pfam ABC transporter transmembrane region 309 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste4g02716 1522 SUPERFAMILY ABC transporter transmembrane region 917 1256 IPR036640 GO:0005524|GO:0016020
Pste4g02716 1522 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste4g02716 1522 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1187 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste4g02716 1522 SMART AAA_5 1302 1494 IPR003593 GO:0016887
Pste4g02716 1522 SMART AAA_5 651 824 IPR003593 GO:0016887
Pste4g02716 1522 FunFam ABC transporter C family member 3 1259 1511 - -
Pste4g02716 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1266 1503 IPR027417 -
Pste4g02716 1522 CDD ABCC_MRP_domain1 624 824 - -
Pste4g02716 1522 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Pste4g02716 1522 FunFam ABC transporter C family member 10 608 860 - -
Pste4g02716 1522 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Pste4g02716 1522 Pfam ABC transporter 1293 1441 IPR003439 GO:0005524
Pste4g02716 1522 CDD ABCC_MRP_domain2 1274 1494 - -
Pste4g02716 1522 Gene3D - 618 853 IPR027417 -
Pste4g02716 1522 Gene3D - 1260 1511 IPR027417 -
Pste4g02716 1522 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1278 1510 IPR003439 GO:0005524
Pste4g02716 1522 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1510 - -
Pste4g02716 1522 Gene3D ABC transporter type 1, transmembrane domain 882 1257 IPR036640 GO:0005524|GO:0016020
Pste4g02716 1522 SUPERFAMILY ABC transporter transmembrane region 297 605 IPR036640 GO:0005524|GO:0016020
Pste4g02716 1522 CDD ABC_6TM_ABCC_D2 915 1251 IPR044726 GO:0140359
Pste4g02716 1522 Gene3D ABC transporter type 1, transmembrane domain 280 606 IPR036640 GO:0005524|GO:0016020
Pste4g02716 1522 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Pste4g02716 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 847 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02716 Pste-Chr4 19209926 19219133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02716 618 871 Calmodulin-binding Proteins AT2G36910 28.938 1.72e-25 113