Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02708 ACAAACAATGGAGGGGTTTTGGAGCATGTTTTGTGGGGAAGCTGGTTGTTCACTAACAGGAGGAAGTCCTTGCAATTATGATTTTAAGTTTTTGAAAGATCCTTCCACATGTGTCAACCATTTGCTGTTCATTTGCATTGATGTGTTGCTTCTGATCATGATCTTATTTACAATCATCAAGAAGTCTTCACAGAAACCATCTCAGGCTCTAATCCAAGTGCAAAGTTATTCCAAATTGCAGCTAGTGTCTGCCATAGCTAATGGCTCTATGGGGCTGATACATTTGTGCTCAGGCATTTGGCTTTTAGAGGAGAATTTGAGGAGAACTCAAGCTGCTTTGCCTCTTGATTGGTGGATGCTGGAATTCATTCAGGGGTTGACATGGTTGCTGGTGGGTTTTACAATAAGTCTTCAGCTGAAACAACTTCCAAGAGCACGGTTATTTATCTTCTCCGTTGTAATGTTCTTGGTTTGTGGTATACTCTGTGCTATATCTTTGTTTTATGCAATTAGTAGCAGAAAATTGTCCCTGAAAGTAGCTTTAGATGTTTTATCTTTTCCAGGGATAATTTTATTGCTATTAAGCATTTACAAGGAATCTATGCATAGAGATACTGAGAGAGGAAATAATGAAAGTCTATACACCCCTTTAAAAGAAGAGTCCAATAATGTTGATTCTGTTAGTTCTGTCACACTATTTGCAAAAGCTGGACTCTTGAGTAGGATGTCATTTTGTTGGATGAATCCACTGATGAAAAGGGGTAAAGAGAAAACACTTCAGGATGAGGATATACCAAAGCTAGGGGAGGCAGATCAAGCAGAAAGTTGTTACCTTCTGTTTCTAGAACAATGGAACAGACTGAAACAAAAAGAACCATCATCACAGCCATCAGTTTTGAAGGCAATAATTATGTGTCACTGGAAGGAGATTTTGATATCAGGATTCTTTGCTTTGCTAAAAGTAATCGCTCTCTCCTGCGGCCCTTTGCTTCTGAATTCCTTTATATTAGTTGCTGAAGGTCACGAGAGTTTCAAATACGAAGGTTATGTGTTGGCCATATCACTGGTCTCTACAAAGATCATAGAATCCTTATCACAAAGGCAGTGGTACTTCCGTACCCGACTCATTGGCATTAAAGTGAGATCGCTGCTCATTGCAGCAATTTATAAAAAGCAGCTGAGGTTGTCCAATGCTGCAAGAATGGTGCACTCTGGTGGTGAGATAATGAACTATGTGAATGTGGATGCTAATAGAATTGGAGAGTTTCCCTATTGGTTTCACCAGACGTGGACAACAAGCGTTCAGCTATGTATTGCATTAGTAGTGCTTTTCCGTGCTGTTGGACTAGCAACATTTGCCTCATTGGCGGTGATAGTTCTAACTGTGCTTTGCAATACTCCACTTGCTAAGTTGCAGCATAAGTTTCAGAGAAAACTTATGCTGGCACAAGATGAGAGATTGAAGGCCACTTCTGAGGCTGTTGTGAGCATGAAGGTTTTGAAGTTATATGCATGGGAAACCAATTTCAGAAATGCAATTGAAAGATTGAGGGATGTGGAACTCAAAAGGTTGTCTGTGGTGCAATTAAGAAGGTCATATAGCAACTTTCTCTTTTGGGCTTCACCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCGTGTTACTTGCTTAATGTTCCTTTGCATGCGAATAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTCCAAGATCCTATTAGAACCATTCCTGATGTCATTGGAGTGGTCATTCAGGCTAAAGTTGCATTTGCAAGGATTGTCAAATTTCTTGAGGCACCTGAATTGCAAAGTGAAAATGCCAAGAAGAGGTGCTTTAGTGACAATATGAGGGGCTCAATTTTGATCAGTTCTTCTGACTTTTCATGGGAAGGTAACACGTCAAAACCAACACTGAGACACATAAATTTGGAGGTTAGACCGGGGCAAAAGGTGGCAATCTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCTTATCAGCAATTCTCAGGGAAGTTCCTATTACTCGTGGAACTATTGAAGTTCATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATACGGGAGAATATATTGTTTGGATTAACCATGAATGCTGAAAAATATCAAGAAACGCTACATAGGTCTTCACTACTGAAGGACCTTGAGTTGTTTCCACATGGTGATCTCGCTGAAATAGGGGAGAGAGGGGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCTCGCGCTCTATATCAGAATGCTGAAATATATCTCTTGGATGATCCATGCAGTGCTGTTGATGCACACACTGCCACCAATTTGTTTAATGAATACATCATGGAAGGACTTGCAGGGAAGACAGTCTTACTGGTGACTCATCAAGTAGATTTTCTTCCAGCCTTTGATTCTGTTTTGTTGATGTCTAATGGGGAAATCATACAAGCTGCTCCTTATCATCATCTGTTGAGCTCAAGCAAAGAATTTCAGGACCTTGTCAATGCTCACAAGGAAACTGCAGGTTCTGACAGGCTTGTGGATGTCACTTCTTCCAAGGGACACTCAGATTCTGGTACAGAGATCAGTAAAATATACGTGGAGAACCAGTTTGAAACATCACAAGGAGGTCAACTAATTAAGAAGGAAGAGAGAGAGGAAGGAAATGAAGGGTTCAAACCTCACTTACAGTATCTGAATCAGGACAAAGGATATATATACTTCTCTGTGGCTTCGCTTTCTCACCTTATATTTGTGATTGGACAGATATTTCAGAACTTATGGATGGCTTCCAATGTTGACAATCCTTATACCAGCTCATTGCAATTGATTGCTGTGTACTTGTTGCTTGGGTTTATTTCAGCGTGTTTCTTGTTCATCAGAAGTCTTGTTGTGGTTGGTATGAGTATTCGATCATCAAAATCTTTATTTTTACAGCTACTAAACTCCCTTTTCCGTGGGCCAATGTCATTTTATGACTCCACACCTTTGGGAAGGATACTTAGTAGGGTATCTTCAGATCTGAGCATTGTCGATCTTGATGTCCCATTTGGGCTTATTTTTGCTGTGGGAGCTACAGCAACCTGTTATTCTAATCTTGCAGTTATAGCAGCCATTACTTGGCAAGTCTTGTTTATCTCTATACCAATGCTTTACATAGCATTTCGCTTGCAGAGATATTACTATGCCACTGCAAAAGAATTGATGCGGATGAATGGCACAACAAAATCGTATGTAGCTAATCATCTTGCCGAATCTATTGCTGGAGTTGTGACAATAAGGGCTTTTGAGGAGGAGGATCGTTTCTTTGCAAAGAATTTTGATCTAATTGATGTCAATGCTAGTCCTTATTTTCATACTTATGCAGCAAATGAGTGGTTGATGCTAAGGTTAGAAACAACCAGTGCAGTGGTTTTTGCATCTGCAGCACTTTGCATGGTGGGACTTCCACCTGGGACTTTCACCTCTGGATTTATTGGCATGGTTCTCTCTTATGGCCTTTCATTAAACTCTTCCCTAGTATTTTCAATTCAAAACCAATGCACTCTAGCAAATCAAATCATATCAGTGGAGAGGCTAAATCAATACATGAATATACCAAGTGAGGCCCCAGAAGTAATAGAGGGAAATCGTCCTCCTGCTAATTGGCCAGCTGAGGGAAAAGTAGAGTTACACGATTTAAAGATAAGGTACCGGCCTGATGCACCACTAGTACTCCGTGGGATCACATGCACATTCGAAGGAGGACACAAGATTGGTGTTGTTGGCAGAACAGGCAGTGGAAAGTCCACTCTTATAGGTGCCTTATTCCGTCTAGTGGAGCCAGCAGGAGGAAAAATATTAGTTCTTGGGAAATGTCAGTTGAGAGAAGTTGTTGAAGAGAAAGAAGAGGGGTTGGACTCCTCAGTTGTTGAAGCTGGAGCAAATTGGAGCATGGGACAGCGACAGTTATTCTGTTTGGGGCGTGCCCTTTTGAGGAGAAGTCGAATACTAGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTACAGAAAACAATCAAGACAGAGTTTGCAGATTGTACTGTAATTACAGTAGCCCACAGAATACCAACTGTGATGGATTGCACCAAGGTTCTCGCCATCCGTGAAGGAAAACTGGTGGAGTATGACGACCCAATGAACTTGATAAAGAGAGAAGGATCATTGTTTGGACAACTTGTCAAGGAATACTGGTCTCATTTGCAGTCTGCTGAATCACACTAAAGCTAGA 4307 0.4105 MEGFWSMFCGEAGCSLTGGSPCNYDFKFLKDPSTCVNHLLFICIDVLLLIMILFTIIKKSSQKPSQALIQVQSYSKLQLVSAIANGSMGLIHLCSGIWLLEENLRRTQAALPLDWWMLEFIQGLTWLLVGFTISLQLKQLPRARLFIFSVVMFLVCGILCAISLFYAISSRKLSLKVALDVLSFPGIILLLLSIYKESMHRDTERGNNESLYTPLKEESNNVDSVSSVTLFAKAGLLSRMSFCWMNPLMKRGKEKTLQDEDIPKLGEADQAESCYLLFLEQWNRLKQKEPSSQPSVLKAIIMCHWKEILISGFFALLKVIALSCGPLLLNSFILVAEGHESFKYEGYVLAISLVSTKIIESLSQRQWYFRTRLIGIKVRSLLIAAIYKKQLRLSNAARMVHSGGEIMNYVNVDANRIGEFPYWFHQTWTTSVQLCIALVVLFRAVGLATFASLAVIVLTVLCNTPLAKLQHKFQRKLMLAQDERLKATSEAVVSMKVLKLYAWETNFRNAIERLRDVELKRLSVVQLRRSYSNFLFWASPVLVSAASFGACYLLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARIVKFLEAPELQSENAKKRCFSDNMRGSILISSSDFSWEGNTSKPTLRHINLEVRPGQKVAICGEVGSGKSTLLSAILREVPITRGTIEVHGKFAYVSQTAWIQTGTIRENILFGLTMNAEKYQETLHRSSLLKDLELFPHGDLAEIGERGVNLSGGQKQRIQLARALYQNAEIYLLDDPCSAVDAHTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSNGEIIQAAPYHHLLSSSKEFQDLVNAHKETAGSDRLVDVTSSKGHSDSGTEISKIYVENQFETSQGGQLIKKEEREEGNEGFKPHLQYLNQDKGYIYFSVASLSHLIFVIGQIFQNLWMASNVDNPYTSSLQLIAVYLLLGFISACFLFIRSLVVVGMSIRSSKSLFLQLLNSLFRGPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFAVGATATCYSNLAVIAAITWQVLFISIPMLYIAFRLQRYYYATAKELMRMNGTTKSYVANHLAESIAGVVTIRAFEEEDRFFAKNFDLIDVNASPYFHTYAANEWLMLRLETTSAVVFASAALCMVGLPPGTFTSGFIGMVLSYGLSLNSSLVFSIQNQCTLANQIISVERLNQYMNIPSEAPEVIEGNRPPANWPAEGKVELHDLKIRYRPDAPLVLRGITCTFEGGHKIGVVGRTGSGKSTLIGALFRLVEPAGGKILVLGKCQLREVVEEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIKTEFADCTVITVAHRIPTVMDCTKVLAIREGKLVEYDDPMNLIKREGSLFGQLVKEYWSHLQSAESH 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02708 1430 Pfam ABC transporter transmembrane region 924 1157 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste4g02708 1430 Pfam ABC transporter transmembrane region 309 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste4g02708 1430 SUPERFAMILY ABC transporter transmembrane region 919 1213 IPR036640 GO:0005524|GO:0016020
Pste4g02708 1430 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524|GO:0016887
Pste4g02708 1430 FunFam ABC transporter C family member 10 606 860 - -
Pste4g02708 1430 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Pste4g02708 1430 Gene3D ABC transporter type 1, transmembrane domain 881 1214 IPR036640 GO:0005524|GO:0016020
Pste4g02708 1430 Gene3D ABC transporter type 1, transmembrane domain 282 606 IPR036640 GO:0005524|GO:0016020
Pste4g02708 1430 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1309 1418 - -
Pste4g02708 1430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1411 IPR027417 -
Pste4g02708 1430 Gene3D - 1217 1294 IPR027417 -
Pste4g02708 1430 FunFam ABC transporter C family member 5 882 1214 - -
Pste4g02708 1430 FunFam ABC transporter C family member 10 292 605 - -
Pste4g02708 1430 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016020
Pste4g02708 1430 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Pste4g02708 1430 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste4g02708 1430 SMART AAA_5 651 824 IPR003593 GO:0016887
Pste4g02708 1430 SMART AAA_5 1259 1394 IPR003593 GO:0016887
Pste4g02708 1430 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Pste4g02708 1430 CDD ABCC_MRP_domain1 631 824 - -
Pste4g02708 1430 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1418 IPR003439 GO:0005524
Pste4g02708 1430 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Pste4g02708 1430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 847 IPR027417 -
Pste4g02708 1430 Gene3D - 1295 1429 IPR027417 -
Pste4g02708 1430 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste4g02708 1430 Pfam ABC transporter 1311 1349 IPR003439 GO:0005524
Pste4g02708 1430 Gene3D - 623 854 IPR027417 -
Pste4g02708 1430 Pfam ABC transporter 1250 1296 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02708 Pste-Chr4 19167127 19173659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02708 605 840 Calmodulin-binding Proteins AT2G36910 29.762 1.71e-26 116