Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02700 ATGGATTCAAGAAACATACCAAACTTGAATGAAGTCCCTAAGAAAACCAAAGGTCGACAGAAAATCGAGATGAAAAAGATAAGCAATGAGCGTAAACTTCGAGTAGCATTCTCAAAGCGTCGCACTGGAATTGTGAAGAAAGCCAGTGAGCTTGCCACCCTTTGTGGTGTTGACCTTGCTGTGATTATGTTCTCACCCAGTAACCAAGTTTTCTCCTTTGGCACCCCAAATGTTGAGTCCGTTATCCAACGCTATATGGCACGAGAACCACACCCCATCATCACCCATGACCTCAACCAGACTTACTGCACTGAGGATGAGGCTGAACTCCGTGCAGAACTCAACCGTTTGAATGAACAGATTGCTGCGGAAAAAAAACGCAAGAAACATCTCAACCAAATGTTGAAGGCCTCAAGGGAAAATTTCTGGTGGGCCACACCAATTAAAAAAATGAACAAGGCCCAGCTTGAAAATTACAAGAAACTGTTGGATGAAGTGAAGGCATGTTTAACAAATAAGCGTGAGAAGCTCCTCTTTGAGAAAACTTTAACCAAATTATCAAGTCAATTTTTTGCAGGTGAAGGCTCCTCCTCCAGTGCTGATAAGACCAACACTCCTAGTCCATGA 627 0.4306 MDSRNIPNLNEVPKKTKGRQKIEMKKISNERKLRVAFSKRRTGIVKKASELATLCGVDLAVIMFSPSNQVFSFGTPNVESVIQRYMAREPHPIITHDLNQTYCTEDEAELRAELNRLNEQIAAEKKRKKHLNQMLKASRENFWWATPIKKMNKAQLENYKKLLDEVKACLTNKREKLLFEKTLTKLSSQFFAGEGSSSSADKTNTPSP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02700 208 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pste4g02700 208 MobiDBLite consensus disorder prediction 1 20 - -
Pste4g02700 208 SUPERFAMILY SRF-like 18 100 IPR036879 GO:0003677|GO:0046983
Pste4g02700 208 Gene3D - 29 92 IPR036879 GO:0003677|GO:0046983
Pste4g02700 208 FunFam Agamous-like MADS-box protein AGL62 29 93 - -
Pste4g02700 208 Coils Coil 156 176 - -
Pste4g02700 208 Coils Coil 107 141 - -
Pste4g02700 208 PANTHER MADS BOX PROTEIN 19 171 - -
Pste4g02700 208 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pste4g02700 208 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pste4g02700 208 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pste4g02700 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pste4g02700 208 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pste4g02700 208 Gene3D - 95 204 - -
Pste4g02700 208 ProSiteProfiles PARP alpha-helical domain profile. 107 208 IPR004102 GO:0003950
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02700 Pste-Chr4 19128945 19129571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02700 14 200 Type I MADS-box Gene Family AT5G60440 38.743 7.22e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste4g02700 SRF-TF 2.2e-21 No_clan