Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02695 GTACTATGTTTTTGTGTGTGAGTGTGTTTTACTTCATTTTAGTACCGACATGACTCCATCCTAATGGGGTGTTCATTTATTCATGTACTTCTTCGTAGAAACCGAGGCTGCTACAATTTCTTCTTCTGCTTTTACCACTCACTCTGAGAAATAAAATCCGAGGCAGAACTGTGGTTTCTAGAAACGTGGTAGAGCTAAGAGAATCTTAGTAATTACAGCTGTTCTTCAATCTTTTCTTACAGGAAGTAAATTACTTCATTAACTGGGATAGAAGTCATTGTTTGGAGCTATAGATAGCGATGCAAACTGTTTACCTGAAAGAACATGAAGGAATTGTCCACAATTCTGTTGGACAATTGTCATCTGCTGTAACTTCAGCTCCATGGTGGAATGCCTGTGGATCTCAACCAGTTTATGGGGAGTATTGTAGCCAGATGAAACCCTTTTCATTGGAGATTTCCAACTATGTAGACCAATTTGGTGCCGTTAAGCATGCGACGCGAGGAGTTGAACAATTGTTGGATAAAGGACATGCAAGTACTACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGGTGATTCACAAATTCCTCAGCCAACCTTATTGCTGCAGTCACCATCACTTGCTGAGCCCCAAAATCGTTTTGAGATAGGGTTTAATCAGCCTATGATCTGTGCAAAATATCCTTACACAGATCAATATTACAGGCTCTTCTCAGCTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCAATTAACTTGACATCGGATGATGGACCAACCTATGTAAATGCGAAGCAGTACCATGGAATCATCAGACGTCGGCAATCACGAGCAAAAGCTGTACTTGAGAATAAATTGATAAAACGTCGCAAGCCATATATGCATGAATCACGCCATCTACATGCAATGCGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAAAAATTCTACTAATGGAAATGGTAGAAATGAAAGTGAAGTGAATAAAACTGGTGGACGACAATTGCAGTCCAGTGCCTCTCAGAATTCTGAAATCCTGCAATCTGAGGTTGGAACTTTAAATTCATCAAAGGAGACAAATCGAAGCAGTTCGAATATCTCTGGTTCAGAGGTGACTAGCATGTATTCACGAGGAGGTTTTGATGGCTTTGCTGTCAATACTTTTGGATCTTCCGTCCACTCTCTTGCAGACATGATGGGTAGCGGGCATGGTATTATCATGCCCACTAAGTGGGTTGCAGCATTTCAAGGTAACTGCTGCAACCTTAAAGTTTGATTTGCAAGGAGACTAATGGGTTTGGTGCAATATTGCATCAAATCCCATCCTTGCAAGGGACCAGATGAAGAAGTTCTGCTGAAGAGTTGTGTTTATTGTGACAAATTTCGTTCCAGAGGCATGCCCCTACATCTGGTTTTAGGCAAACCATTCTTGGCTACTGATTAGGCAACTCATCCTTGGCTCATTATATTAGTAGTACTGTTTCTTTGTTTAGGCACAGGCCTGCCATAACATGTGTAGACATGCCATTGGCTTGATATCCTGATGCAGTAGAATATGATGTGTCTGTTTGTGTTAAAATAACATATCTGGCTTCATATGTGTATTTTCAGTCATGTCTAGGTGTGACATTTTAATTTGTTCTGGATTTTTGACTTTTTGTGGAGCATGTAACCTAGAACTCTGGATTGTGATCTTTGTTAGAGAAAATAAGACATTAATATGGGCTTACCCTCCTTTGAAATGTTAGAATTTTATTATCATTTTGTATTTGGAAAATGTGAACTGTACAAGAAGTCACTAGCAGGTGTGATGTGCTCCCGGCCTCTTTG 1852 0.4028 MQTVYLKEHEGIVHNSVGQLSSAVTSAPWWNACGSQPVYGEYCSQMKPFSLEISNYVDQFGAVKHATRGVEQLLDKGHASTTQFTIFPDDCKMSGDSQIPQPTLLLQSPSLAEPQNRFEIGFNQPMICAKYPYTDQYYRLFSAYGPQISGRIMLPINLTSDDGPTYVNAKQYHGIIRRRQSRAKAVLENKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSTNGNGRNESEVNKTGGRQLQSSASQNSEILQSEVGTLNSSKETNRSSSNISGSEVTSMYSRGGFDGFAVNTFGSSVHSLADMMGSGHGIIMPTKWVAAFQGNCCNLKV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02695 332 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Pste4g02695 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 218 IPR001289 GO:0003700|GO:0006355
Pste4g02695 332 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
Pste4g02695 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 95 284 IPR001289 GO:0003700|GO:0006355
Pste4g02695 332 Gene3D - 161 223 - -
Pste4g02695 332 MobiDBLite consensus disorder prediction 202 278 - -
Pste4g02695 332 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Pste4g02695 332 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Pste4g02695 332 MobiDBLite consensus disorder prediction 218 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02695 Pste-Chr4 19093830 19099103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02695 26 332 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.377 3.80e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pste4g02695 CBFB_NFYA 3.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02467 5 17234827 17240076 Pste4g02695 4 19093830 19099103 PCT