Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02694 ATGGCTGGATTGGAATTCATACCCATAGGTACAATATTGACCGTTCTAAGCAACCAAGTTGTGAAAACAGCTAATGAAACAATTGATGTTGTTATTGATAAAGAAAGTTTTAAGGTCCTTTCAAAACACCTCCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAATCAGTAAGGGTTGCACTGGAGTCCTTTGAATCAGATGTCAAAAACGCAAATAATTTGGTCGAGAAGTACAACCGAGGCGGCTTTTACCTGCTGGTGAGGTGCAGATACGTAGTCAAGGAGGTTGAACAAGTCATAAGGGATATTGGAAAGTCTCTGGCTTCACTGTCCATTGCTAACACTGAAGTCCTATCAATAGTTTCTGATCAGGTTAACAGGTTACAGAATGAAATGCAAACAGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGAATCATGGAATTAGGGAGCACAAACAAGATCAGGCTTTTGGAAATGACATGCTTGAGGAGATAGCAAGGGCAGTTGGGCTGCCAGTGGAGCCTTCAGAGATAAGCAAAGAGCTAGCCTGCATTAGGCAGGAAAGGGAGGAAGCAGCCACAAGGAAAGAAAGAGCTGAATTTATGTTTTTGGAGCAGATCATTGAGCTACTATCTCGAGCTGATGCTGCAAGGGATTATGAAGAAGTTAAGAAGCAATACTTTAAAAGGGTTCAGGTGATAGAGAGATATGATTCAAGGGAAAAATATATCCTACCACTTAATTCTTTCCTTTGTCCCATAACTGGAGCTGTTATGATAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATCGAAGGTTGGTTTGATGATGGAAACAAGACTGATCCAGAAACAAAAGAAGTTCTTGAAGATACTACCTTGAGATCAAATATTCGATTAAGAGAATTCATAGAAGAGTGGGGAGAAGTTAATTACTGCTTTGTAATAAGGTCTATAAGGGAAAGCCTATTATCCAATTCTAAATCATCAGTGCAAGAATCCCTGAGCCAAATGCGAGCTCTCATTAGAGAGAATTCCACTAACAAGGATTGGATTTCTATAGGAGAGCTAACTGATATAATTATCTCTATCCTTGGGGAATCTGATTCCAGAGATGTGAAGATGAAGATCTTGATTACTTTGAAGGATGTTGTAGAGGGGCATGCAAGAAATAAGGAAAAAGTGGTTGAATCTAAAGGTTGGTATCACATTATTTCCTGCTTAGGGAGTGACTCTAGAATCTCAAAGGAAGCTGTTAATTTGCTGTATGAGTTACTTCAAGACCGAACTGGTTGGAATAAAAGTTTCTGCAAAAAACTATCTGAGCATCCCAGTGCAGTTTCTTACCTTGTTATTCTTATAAAGGGTCCAGTAAGCGATTTAGCTGGGGTTTCAGAAAAGATTTTGATGGAGCTTTCTAAAATAGATGAAGAAAACATTTCAGCAGCTGCTGCTAAGTTTGGCTGGTACAAACCGCTTATTGATTGCATGATTCAAGGATCAGAGTCTTCAAGAATATCGATGGCGAAGGCCATTGTTAATATGGAGTTGAAAGATTTGAACTTGAAACTCCTTGGAGAGCAAGGAGCTATACTTCCTTTGCTAGACATGCTATCTGGCAGCATTGAATCCAAAGAACTGTCACTGTCAGCCCTGGTTAAACTAGCAAGATTTCATGCCAATAAGGGGATAATTGCAACATATGGAGGTGTGCCTCTTGTTGTAGATTTAATGTTCTCTCACAGGATCCGTTCATTCATAATCATTAAATGTTGTGAACTACTCGAGAAGCTTGCTTTAGATCATGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAACCAGCTTGAGTTAGATAACATCATCTCCAATCTGCTAGCTCTAACGCAGAGTCCAAACTCAGGTCACTACCGAAAACCTGCATTACGTGCAATTCTTGGCATTTGCAAGTTTGAGACTGATTTAGTTAAGAAGGCAGTTCTTGCAGCCAATGGGGTATCTCTAATCCTCCACTTTCTTGATGATTCCGACCCAGAAATCAGGGAAACTGCCATAAATCTTCTCTTTCTTTTTTCTCAACATGAACCAGAAGGAGTAGCTGACTACCTGTTCAGGCCAAGAACACTGGAAGCTTTAATTGGTTTTCTTGAGAATGACAACAATGATGATGTGCAAATGGCTGCTGCTGGCTTACTAGCTAACCTTCCAAAATCAGAACGACAACTCACTATGAAGTTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTAAAAAACGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTTTTCAGGTTCACAGACCCCACAAATATCGAGTCACAGCATGATTTGGTTAAACGGGGAATATATCCTTTGCTTGTAAATTTTCTCAACACTGGTTCAGTAACAGCAAAGGCAAGGGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAAGTGTTTCCAAATCAACCAGTTGCACTGGTTGGTGGTGTTTTAGATCATCACGAGTCCCTTTGTGTTCAGCACATGGGACTGTATGTAGTGTGAGTTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGCTTGATAAGGCTGTTACATGGGGAGGTTCATGCATCAGCGTATGAAGCTATACAGACTCTTTCCACATTGGTTTTGAAAGACTTTCCCCAAAGGGGTGCTCGTGTGTTGCATGAGTCAAATGCAATGAGACCCCTATTGGAAATTTTAAGTTGGGGATCTGATTCTCTCAAGGCAGAAGCTCTAGAACTCTTGGAGAAGGTGTTTGGGTCAAAGGAAATGGTTGATTACTATGGAGCAACAGCTAGGGTACGTCTAATTGGTCTGACAGGCATCAATGAATATGAGGATGGCCACCTAAGGAGAAAGGCTGCCAGGGTAATGTCATCGCTTGAACGTTATTCAAAGTCATAA 3027 0.408 MAGLEFIPIGTILTVLSNQVVKTANETIDVVIDKESFKVLSKHLLDIAPVLKELQLQELNESQSVRVALESFESDVKNANNLVEKYNRGGFYLLVRCRYVVKEVEQVIRDIGKSLASLSIANTEVLSIVSDQVNRLQNEMQTVEFEASQSQLQIVDKLNHGIREHKQDQAFGNDMLEEIARAVGLPVEPSEISKELACIRQEREEAATRKERAEFMFLEQIIELLSRADAARDYEEVKKQYFKRVQVIERYDSREKYILPLNSFLCPITGAVMIDPVSLCTGTTCERSAIEGWFDDGNKTDPETKEVLEDTTLRSNIRLREFIEEWGEVNYCFVIRSIRESLLSNSKSSVQESLSQMRALIRENSTNKDWISIGELTDIIISILGESDSRDVKMKILITLKDVVEGHARNKEKVVESKGWYHIISCLGSDSRISKEAVNLLYELLQDRTGWNKSFCKKLSEHPSAVSYLVILIKGPVSDLAGVSEKILMELSKIDEENISAAAAKFGWYKPLIDCMIQGSESSRISMAKAIVNMELKDLNLKLLGEQGAILPLLDMLSGSIESKELSLSALVKLARFHANKGIIATYGGVPLVVDLMFSHRIRSFIIIKCCELLEKLALDHDGIDFFVDGEGNQLELDNIISNLLALTQSPNSGHYRKPALRAILGICKFETDLVKKAVLAANGVSLILHFLDDSDPEIRETAINLLFLFSQHEPEGVADYLFRPRTLEALIGFLENDNNDDVQMAAAGLLANLPKSERQLTMKLIDLGGLDAIISILKNGTMEAKENALSALFRFTDPTNIESQHDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTSVSKSTSCTGWWCFRSSRVPLCSAHGTVCSVSSTFCLLEANALPGLIRLLHGEVHASAYEAIQTLSTLVLKDFPQRGARVLHESNAMRPLLEILSWGSDSLKAEALELLEKVFGSKEMVDYYGATARVRLIGLTGINEYEDGHLRRKAARVMSSLERYSKS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02694 1008 Coils Coil 69 89 - -
Pste4g02694 1008 SMART arm_5 537 576 IPR000225 GO:0005515
Pste4g02694 1008 SMART arm_5 758 798 IPR000225 GO:0005515
Pste4g02694 1008 SMART arm_5 407 446 IPR000225 GO:0005515
Pste4g02694 1008 SMART arm_5 921 961 IPR000225 GO:0005515
Pste4g02694 1008 SMART arm_5 801 841 IPR000225 GO:0005515
Pste4g02694 1008 SMART arm_5 672 712 IPR000225 GO:0005515
Pste4g02694 1008 SMART arm_5 714 756 IPR000225 GO:0005515
Pste4g02694 1008 SMART arm_5 877 917 IPR000225 GO:0005515
Pste4g02694 1008 SMART arm_5 577 619 IPR000225 GO:0005515
Pste4g02694 1008 Pfam U-box domain 263 328 IPR003613 GO:0004842|GO:0016567
Pste4g02694 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1006 - -
Pste4g02694 1008 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Pste4g02694 1008 SUPERFAMILY RING/U-box 248 330 - -
Pste4g02694 1008 Coils Coil 126 153 - -
Pste4g02694 1008 SUPERFAMILY ARM repeat 636 1003 IPR016024 -
Pste4g02694 1008 CDD MLKL_NTD 19 144 - -
Pste4g02694 1008 Gene3D - 334 537 IPR011989 -
Pste4g02694 1008 ProSiteProfiles RPW8 domain profile. 1 153 IPR008808 -
Pste4g02694 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 726 754 IPR000225 GO:0005515
Pste4g02694 1008 Gene3D - 538 854 IPR011989 -
Pste4g02694 1008 Gene3D - 856 1008 IPR011989 -
Pste4g02694 1008 SUPERFAMILY ARM repeat 329 713 IPR016024 -
Pste4g02694 1008 CDD RING-Ubox_PUB 264 313 IPR045210 -
Pste4g02694 1008 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Pste4g02694 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 333 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02694 Pste-Chr4 19092954 19096823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02694 263 1006 U-box Gene Family AT1G76390 26.928 8.46e-43 166