Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02690 TCCGATACTCTCTCTCTAAACTCTTTCTCTCTCTCTTCTGTCCCCCTCCATCCCCCCTCTTCGGCGACGCCGCCGGAACCAGCATTTTTCGCCGGAAATTATCCTCCGGCGCCGAGAAACGCCCTCTTCGCTCACCTTCCCACTGAACCGTGTCACCCGAACCGGGTTCTTTTTGTTTCCTCACCTGGTCCAACGATCGCAGAGGGTGGTGGCGTTTCGGTGAATCTCTCTCATGGAATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGACGAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTACTGAAATATGGTCGTAAGGGAAAACCTAAGTTTTGTCCGTTTAGACTTTCCAATGATGAGTTGTCTTTAATCTGGATATCAAGCAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTTTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTGCGTCCTGAGAAGGACTATCTGTCTTTTTCACTTATATATAACAACGGGAAGCGGTCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGACTGCTGGTCTCAAGGCACTGATATCTTCCTGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGACGGAGGCCTATATCTTGATGATAGCAGAGACTTGACATCAAATAGTCCTAGTGAGAGTTCAGTTAGTGCTTCACGAGACATCAGTTCTCCTGACATTTCTGTTAGTCTGGCAAATACTTCTCCACAATCCTTTCACTCTGAGAATACCTTAAATTTTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTAAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCAGACGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATATTGTTAAAGTTGGTGCTGAGAAAAGTGCCAGTTATTTCAGCCCAAGGACAGATATTCTTCTCCCCAGACCACTGGAGTCTAGTGTGGTTTTAGATGTGCTTCAAATAGCATGTGGTGTTAAACACGCTGCTCTAGTCACAAGGCAAGGTGAACTTTTTTCATGGGGTGAGGAATCTGGAGGACGCCTTGGCCATGGGGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCAATGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGAGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCGAAGAGGATTGCAGGACCACTAGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCCTTGGCCATGGAGATAGGGAAAATGTTTCATATCCCAGAGAAGTAGAATCCTTGTCTGGGTTGAGGACAACAGCTGTTGCATGTGGAGTGTGGCACACTGCTGCTGTTGTAGAGGTTATTGTGACGCAATCAAGTGCCAGTGTGTCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGACAAAGATGCTCGACTTAAACCGACTTGTGTACACTCACTTATTGATTACAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGTCTGACAACATCCGGACATGTTTTTACAATGGGAAGCACGGTTTATGGTCAGCTTGGAAATCCCCAATCTGATGGTAAGCTGCCTTGTTCAGTTGAAGACAAGCTTGCAGGAGAATGTGTTGAAGAAATTGCATGTGGGGCTTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTACAGTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGTGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTGTCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAATTGTTATAACTGTGGACTTGTGCACTGCCATTCATGTAGCTCTAGGAAAGCGTTAAGAGCTACCCTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCCTGTTTTGTAAAATTGAACAAGGTTGCGGAATCTGGCAATAGTAATCGAAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAGAAGTCTGACCTAAGATTGACCAAGACAGCAGTGCCTTCTAATATGGATCTGATTAAGCAGCTTGATAATAAGGCTGCCAAACAGGGAAAGAAGGCTGATACATTCTGTCTGGCTCGTCCCTCACAACCACAATCTTTGCTACAACTCAAAGATGTTGTCTTGTCTACTGCTATTGATTTGAAGCGAACAGCTCCAAGACCTGTTTTGACAGCATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCTCCTCGTTCAGCTACACCTATTCCAACAACATCGGGGCTTTCCTTCTCAAAAAGCATTACTGATAGTTTGAAGAAAACAAATGAACTTTTGAATCAGGAGGTATTGAAGTTACGTACTCAGGTTGATACACTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAACAAAAAAGACTCAGGAAGCTATGGCACTGGCTGCTGAGGAATCAGCCAAATCTAAGGCTGCCAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCGCCTGGCGCTTATGATACTGAAAACATCAGACCAGCATACCTGCCAAATGGTGTGGAGCCAAATGGCATCCACTATCCAGACTTAAATGGGGAGCGTCACACGAGGGCCGAGTCAATCAGTGGATCTAGTTTGGCTTCCATAGGACTTGAATCATCCCTGATGAATAGAACTGAGAGCACTTTGCCTGGAAGCAATGGAGCTAATCTTTACCAGCAAAACCGAGGATCTGTAACCTCCAATGGGACCGATGATTATCCGGACGTTAAATTACCAAATGGCATTGGCGTAATTCAGGCCAGTGGCAGTACTGTATCTGATACTGTTGATGGTAGGGACTCTGGACATTTCAAAGATGATGAGAGTGATTTGAGATCAAGGAACGCTCTAGTGCCTGCAAATGGTAATCAAATTGAGGCAGAATGGATCGAACAATATGAAACTGGCGTCTATATAACACTGGTTGCCCTGCGTGACGGAACAAGAGATCTGAAGCGTGTGCGGTTCAGCCGGCGGAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCGGAGAACCGCGATAGAGTATACGAAAGGTACAATGTTCGAAGTACGGACAAGTCTTCGGGTCAGGCGGCACGTAGGGCAGAGGGTGCTGGTTCG 3585 0.4547 SDTLSLNSFSLSSVPLHPPSSATPPEPAFFAGNYPPAPRNALFAHLPTEPCHPNRVLFVSSPGPTIAEGGGVSVNLSHGMADLVSYRNADRDIDEALIALKKGAQLLKYGRKGKPKFCPFRLSNDELSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWTAGLKALISSCQGGRSKIDGWSDGGLYLDDSRDLTSNSPSESSVSASRDISSPDISVSLANTSPQSFHSENTLNFERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENIVKVGAEKSASYFSPRTDILLPRPLESSVVLDVLQIACGVKHAALVTRQGELFSWGEESGGRLGHGVGKNVVQPRLVEAMASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTTAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLKPTCVHSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKLPCSVEDKLAGECVEEIACGAYHVAVLTSKNEVYSWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRATLAPNPGKPYRVCDSCFVKLNKVAESGNSNRRNAMPRLSGENKDRLEKSDLRLTKTAVPSNMDLIKQLDNKAAKQGKKADTFCLARPSQPQSLLQLKDVVLSTAIDLKRTAPRPVLTASGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRTQVDTLRQRCELQELELQRSTKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDTENIRPAYLPNGVEPNGIHYPDLNGERHTRAESISGSSLASIGLESSLMNRTESTLPGSNGANLYQQNRGSVTSNGTDDYPDVKLPNGIGVIQASGSTVSDTVDGRDSGHFKDDESDLRSRNALVPANGNQIEAEWIEQYETGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSTDKSSGQAARRAEGAGS 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02690 1195 CDD FYVE_like_SF 712 765 - -
Pste4g02690 1195 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
Pste4g02690 1195 Gene3D - 92 209 IPR011993 -
Pste4g02690 1195 Gene3D - 254 540 IPR009091 -
Pste4g02690 1195 MobiDBLite consensus disorder prediction 864 896 - -
Pste4g02690 1195 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 429 483 IPR000408 -
Pste4g02690 1195 SUPERFAMILY PH domain-like 93 202 - -
Pste4g02690 1195 Pfam Regulator of chromosome condensation (RCC1) repeat 546 593 IPR000408 -
Pste4g02690 1195 Pfam Regulator of chromosome condensation (RCC1) repeat 429 480 IPR000408 -
Pste4g02690 1195 Pfam Regulator of chromosome condensation (RCC1) repeat 598 647 IPR000408 -
Pste4g02690 1195 Pfam Regulator of chromosome condensation (RCC1) repeat 484 532 IPR000408 -
Pste4g02690 1195 Pfam Regulator of chromosome condensation (RCC1) repeat 652 699 IPR000408 -
Pste4g02690 1195 Pfam Regulator of chromosome condensation (RCC1) repeat 377 425 IPR000408 -
Pste4g02690 1195 CDD PH_PLC_plant-like 91 203 - -
Pste4g02690 1195 Coils Coil 910 944 - -
Pste4g02690 1195 ProSiteProfiles BRX domain profile. 1120 1175 IPR013591 -
Pste4g02690 1195 Pfam Transcription factor regulating root and shoot growth via Pin3 1119 1174 IPR013591 -
Pste4g02690 1195 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 137 974 - -
Pste4g02690 1195 SMART fyve_4 701 770 IPR000306 GO:0046872
Pste4g02690 1195 Pfam Transcription factor BRX N-terminal domain 954 989 IPR027988 -
Pste4g02690 1195 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 522 532 IPR000408 -
Pste4g02690 1195 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 651 702 IPR000408 -
Pste4g02690 1195 MobiDBLite consensus disorder prediction 864 881 - -
Pste4g02690 1195 Pfam Pleckstrin homology domain 137 202 IPR001849 -
Pste4g02690 1195 SUPERFAMILY FYVE/PHD zinc finger 703 778 IPR011011 -
Pste4g02690 1195 FunFam PH, RCC1 and FYVE domains-containing protein 1 286 536 - -
Pste4g02690 1195 Pfam FYVE zinc finger 703 769 IPR000306 GO:0046872
Pste4g02690 1195 PRINTS Chromosome condensation regulator RCC1 signature 429 445 IPR000408 -
Pste4g02690 1195 PRINTS Chromosome condensation regulator RCC1 signature 470 486 IPR000408 -
Pste4g02690 1195 PRINTS Chromosome condensation regulator RCC1 signature 588 606 IPR000408 -
Pste4g02690 1195 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Pste4g02690 1195 PRINTS Chromosome condensation regulator RCC1 signature 486 500 IPR000408 -
Pste4g02690 1195 PRINTS Chromosome condensation regulator RCC1 signature 646 667 IPR000408 -
Pste4g02690 1195 PRINTS Chromosome condensation regulator RCC1 signature 360 373 IPR000408 -
Pste4g02690 1195 MobiDBLite consensus disorder prediction 1038 1066 - -
Pste4g02690 1195 MobiDBLite consensus disorder prediction 1 17 - -
Pste4g02690 1195 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 707 769 IPR017455 -
Pste4g02690 1195 SUPERFAMILY RCC1/BLIP-II 314 704 IPR009091 -
Pste4g02690 1195 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 363 373 IPR000408 -
Pste4g02690 1195 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 428 IPR000408 -
Pste4g02690 1195 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 547 598 IPR000408 -
Pste4g02690 1195 Coils Coil 959 979 - -
Pste4g02690 1195 MobiDBLite consensus disorder prediction 1083 1103 - -
Pste4g02690 1195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 709 780 IPR013083 -
Pste4g02690 1195 FunFam Putative E3 ubiquitin-protein ligase HERC1 709 777 - -
Pste4g02690 1195 MobiDBLite consensus disorder prediction 1038 1067 - -
Pste4g02690 1195 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 376 IPR000408 -
Pste4g02690 1195 Gene3D - 541 708 IPR009091 -
Pste4g02690 1195 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 599 650 IPR000408 -
Pste4g02690 1195 MobiDBLite consensus disorder prediction 776 795 - -
Pste4g02690 1195 MobiDBLite consensus disorder prediction 1 25 - -
Pste4g02690 1195 FunFam PH, RCC1 and FYVE domains-containing protein 1 537 708 - -
Pste4g02690 1195 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 470 480 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02690 Pste-Chr4 19061337 19068474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02690 1121 1191 Major Intrinsic Protein MIP AT1G31880 45.070 9.83e-14 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01052 9 7377920 7387523 Pste4g02690 4 19061337 19068474 PCT