Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02682 CCGGTGTTGTTGAGAAAAAGAAAAAGAAAAATTCTGACGCGGTTGCATGGTTCACCGGTTCAACTCTTCTGCAACTCTGGGTATGGTCCACGTCAGCTTTACCCTCACGTTGACTTCTCGTCTCTCCAATCTCTGTCTAACGCGAAAATGAACGACTTGTTCTCGACCAGCTCCTTCTCGCGCTTCCGCAGCGACCAGCCCTCGCCGGACCGCCACCATGTCATCGAGATGTCGGGGGTAGGAGGAGGAGGAGGAGGCGGCGGAGGGGGGCGCGGCGGCGAAGTGAACCTGGACAAATTCTTCGAGGACGTGGAGGGAGTGAAGGAGGAGCTGAAGGAGTTGGAAGGCTTGGCGCGGTCGCTGAGGAGCAGCCACGAGCAGAGCAAGACGCTGCACCACGCCATGGCCGTGCGGGACCTCCGCTCGCGCATGGACGGCGACGTTTCGGTCGCCCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCCCTCGACCGCTCCAACGCCGCCAACCGCCACCTGCCTGGCTGCGGACCCGGTTCCTCCTCCGACCGCACCCGCTCCTCCGTCGTCAACGGCCTCAAGAAGAAGCTCAAGGACTCCATGGACAACTTCAACGATATTCGCCAGCTTGTCTCCTCCGAGTACCGCGAGACCGTCCAGCGGCGCTACTTCACCGTCACCGGCGAGAATCCCGATGACAAGACGCTCGATCTCTTGATCTCCACCGGTGAGAGTGAAACCTTCCTTCAGAAGGCCATTCAAGAGCAAGGAAGGGGTAGAATTCTGGACACCATTAATGAGATTCAAGAGAGGCATGATGCTGTAAAAGAGTTGGAGAAGAGTCTCAAGGAGTTGCACCAAGTGTTCCTTGACATGACAGTGTTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCATTCGTTTGTGCGCACTGGAGCTGAACAGTTGCAGACTGCACGGAAGCACCAGAAAAACACCAGGAAATGGACTTGTTATTGTATCATACTTCTTCTGGTGATCATCTTGGTTGTGGTGCTCTCCATCACGAGGCCATGGGAAAATAACAGTAGTGGTGGAAATGGTGGTGGTCAGCCTGCACCAGCTCAAACACCTCCATCTTCACCTTCACCTCCAGCTCCTACTGTAATACAGAACAACGATCAAGTCTCGCCGGACCACCATGTGATCGAGATGGCGGCGGTGTCATCGCCGTCGGCAGAGGGCAGCGTGAACCTGGGAAAGTTCTTTCAAGAAGTTGAGCAAGTAAAAGATGAGCTGAAAGAGTTGGAGCATCTTCATGAGACCCTCCGGAGATCTCATGAGAAGAGCAAAACCCTTCACAGCGCAAAAGCTGTGAAGGAACTTCGCTATCGCATGGATGCTGATGTGGCACTTGCTCTTAAGAAAGCAAAGCTTGTCAAGGTCCGGCTTGAAGTATTGGACCGGTCCAATCAGACAAGCCGAAACTTGCCTAATTCAGGACCCGGTTCGTCTTCAGACCGGACCAGGACATCTGTGGTTAGCGGACTGAGGAGGAAGCTGAAAGATTCCATGGACAGTTTTAATAGTCTCAGACAACAGATATCATCGGAGTATAGGGAAACGGTACAGCGTAGATATTTTACTGTCACCGGAGAGAACCCTGATGACAAAACCATTGACCTTCTCATCTCTACTGGTGAGAGTGAAACATTCTTGCAAAAAGCCATCCAGCAGCAAGGTAGAGCGAGCGTGATGGACACGATCCAAGAAATTCAAGAGAGACACGACACAGTCAAAGAAATAGAGCGAAACCTTAACGAGCTGCACCAAGTGTTCTTAGACATGGCCGTGTTGGTGCAATCCCAGGGCGAACAGTTAGACGACATCGAGAGCCACGTGGCACGTGCCAACTCGTACGTGCGAGGTGGGGTCCAGCAGTTGCAAGTAGCAAGGAAGCACCAGAAGAACACCCGAAAGTGGACCTGCATAGCCATCATTCTTCTCATAATTATAATCTTGATCATAGTTCTTCCCATAGTGGTGGCTGCGAACAACGTGGACTGGTTCAAACATTGTTATCTTTTTAGTCAAAAGCGTCGTGTCTACGTGTACCGTTTCTATGAAGCGGTTTCATATCCGGATTTGGCACCTGCG 2166 0.5235 PVLLRKRKRKILTRLHGSPVQLFCNSGYGPRQLYPHVDFSSLQSLSNAKMNDLFSTSSFSRFRSDQPSPDRHHVIEMSGVGGGGGGGGGGRGGEVNLDKFFEDVEGVKEELKELEGLARSLRSSHEQSKTLHHAMAVRDLRSRMDGDVSVALKKAKLIKLKLEALDRSNAANRHLPGCGPGSSSDRTRSSVVNGLKKKLKDSMDNFNDIRQLVSSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAHSFVRTGAEQLQTARKHQKNTRKWTCYCIILLLVIILVVVLSITRPWENNSSGGNGGGQPAPAQTPPSSPSPPAPTVIQNNDQVSPDHHVIEMAAVSSPSAEGSVNLGKFFQEVEQVKDELKELEHLHETLRRSHEKSKTLHSAKAVKELRYRMDADVALALKKAKLVKVRLEVLDRSNQTSRNLPNSGPGSSSDRTRTSVVSGLRRKLKDSMDSFNSLRQQISSEYRETVQRRYFTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLQVARKHQKNTRKWTCIAIILLIIIILIIVLPIVVAANNVDWFKHCYLFSQKRRVYVYRFYEAVSYPDLAPA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02682 722 Coils Coil 422 449 - -
Pste4g02682 722 SMART SynN_4 417 543 IPR006011 GO:0016020
Pste4g02682 722 SMART SynN_4 92 218 IPR006011 GO:0016020
Pste4g02682 722 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 592 654 IPR000727 -
Pste4g02682 722 CDD SNARE_syntaxin1-like 266 328 - -
Pste4g02682 722 SMART tSNARE_6 262 329 IPR000727 -
Pste4g02682 722 SMART tSNARE_6 587 654 IPR000727 -
Pste4g02682 722 CDD SynN 422 579 IPR006011 GO:0016020
Pste4g02682 722 MobiDBLite consensus disorder prediction 494 517 - -
Pste4g02682 722 Pfam SNARE domain 628 680 IPR000727 -
Pste4g02682 722 Pfam SNARE domain 303 355 IPR000727 -
Pste4g02682 722 CDD SNARE_syntaxin1-like 591 652 - -
Pste4g02682 722 CDD SynN 97 254 IPR006011 GO:0016020
Pste4g02682 722 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 267 329 IPR000727 -
Pste4g02682 722 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 419 549 - -
Pste4g02682 722 Pfam Syntaxin 99 302 IPR006011 GO:0016020
Pste4g02682 722 Pfam Syntaxin 424 627 IPR006011 GO:0016020
Pste4g02682 722 Coils Coil 97 124 - -
Pste4g02682 722 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 94 224 - -
Pste4g02682 722 Gene3D - 94 227 - -
Pste4g02682 722 Gene3D - 420 552 - -
Pste4g02682 722 ProSitePatterns Syntaxin / epimorphin family signature. 273 312 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pste4g02682 722 PANTHER SYNTAXIN 123 350 IPR045242 -
Pste4g02682 722 FunFam Syntaxin 132 585 685 - -
Pste4g02682 722 Gene3D - 264 360 - -
Pste4g02682 722 Gene3D - 582 686 - -
Pste4g02682 722 Coils Coil 267 287 - -
Pste4g02682 722 ProSitePatterns Syntaxin / epimorphin family signature. 598 637 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pste4g02682 722 SUPERFAMILY t-snare proteins 421 647 IPR010989 GO:0016020|GO:0016192
Pste4g02682 722 MobiDBLite consensus disorder prediction 494 515 - -
Pste4g02682 722 SUPERFAMILY t-snare proteins 95 322 IPR010989 GO:0016020|GO:0016192
Pste4g02682 722 FunFam Syntaxin 132 260 360 - -
Pste4g02682 722 MobiDBLite consensus disorder prediction 366 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02682 Pste-Chr4 19014018 19023722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02682 418 666 SNARE and Associated Proteins AT3G11820 74.297 3.99e-130 386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02458 5 17161469 17163531 Pste4g02682 4 19014018 19023722 PCT