Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02658 TATGAATCCTAATGATGATGATTTTGTGATCAATGTGAAGGAGGAGTTGTTTCCCGAAGAAGGTGTGGTTGTTCCACAACCACTTGAGGGGCTTCATGAAAGTGGTCCTCCACCATTCCTCACAAAGACTTATGACATCGTTGATGATGTTTCCACTGATGAGATAGTTTCCTGGAGCAGAGGAAACAACAGCTTCGTTGTGTGGAATCCTCAGTCTTTTTCCATCACTCTTCTCCCCAGATACTTCAAACACAACAACTTCTCCAGCTTTGTCAGACAACTCAACACCTATGGGTTTAGAAAAGTAGACCCTGATAGGTGGGAGTTTGCAAATGAAGGGTTTCTCAGAGGACAAAAGAATCTATTGAAGAACATAAGGAGAAGGAAGACAATTCATCAACAACCCCATCCACTACAACAAGCTCTAGACCCTTGTGTTGAAGTGGGAAGGTTTGGATTGGATGGAGAAGTTGATGGATTGAGACGTGACAAGCAAGTTCTCATGGTAGAGCTACTGAAGCTTAGACAGCAACAGCAGAACACAAGAAACCAGCTTCAATCAATGGAAACTAGGCTTAAAAGAACTGACCAGAAACAGCAGCAGATGATGAAGTTCTTGGCAAGGGCAATGCAGAACCCCAACTTCCTGCAGCAATTGGTTCAACGAAGGGAATTGAGGAAGGAGTTGGAGGAAGCTTTTTCCAACAAGAGAAGAAGACCTATTGATCAAGGGACTAGTTTAGTTAAACTTGAACAGCAAGAATACAATGAGAACATTGAGGAGGAGAAAGGACAAGAACTTGAAACAAGAAATGAAGGAATTGAGGAAGTGCTCTGGGAAGAACTTTTGAATGAGGGCATTGAAGAAGATCTACTAGGATTGGAAGAAGATGATGAAGATATAACTGTGTTGGCAGAGGAACTTGGTTATTTGGCCTCAACTCCTAAA 949 0.4226 MNPNDDDFVINVKEELFPEEGVVVPQPLEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRGNNSFVVWNPQSFSITLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKNLLKNIRRRKTIHQQPHPLQQALDPCVEVGRFGLDGEVDGLRRDKQVLMVELLKLRQQQQNTRNQLQSMETRLKRTDQKQQQMMKFLARAMQNPNFLQQLVQRRELRKELEEAFSNKRRRPIDQGTSLVKLEQQEYNENIEEEKGQELETRNEGIEEVLWEELLNEGIEEDLLGLEEDDEDITVLAEELGYLASTPK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02658 316 Gene3D - 31 130 IPR036388 -
Pste4g02658 316 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 259 IPR027725 -
Pste4g02658 316 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g02658 316 Pfam HSF-type DNA-binding 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g02658 316 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g02658 316 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g02658 316 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g02658 316 SMART hsfneu3 35 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g02658 316 FunFam Heat shock transcription factor 1 32 129 - -
Pste4g02658 316 Coils Coil 157 198 - -
Pste4g02658 316 SUPERFAMILY "Winged helix" DNA-binding domain 34 128 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02658 Pste-Chr4 18795895 18797527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02658 22 314 HSF AT3G22830 53.186 3.55e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste4g02658 HSF_DNA-bind 8.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02658 4 18795895 18797527 Pste4g02658 4 18795895 18797527 ECH