LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g02611	GCATGGCGGACACACAACCGCAACTGAACGACGCCGTTGCTTCAAACGAGAGGGAGAGGCTTCACACGCGATGCTGCTACTGCCTCTTCAAAACCGTGTGGATCATTCTGGTTCTCATAATAATCCTGGTCATGGTCGTCATTCTGGTCCTTTACATCGTAATCCAACCACGCTCCTTCAAGTTCCACGTCACCGAAGCCACACTCAGCCAATTCAACTACACCGCCAACGACAACACCCTCAGGTACAACCTCGTACTCAACTTCACCGCGCGAAACCCCAACAAGAAGCTCAACTTCTACTACGACCAAGTGGTGGCTCACGTGTCCTATGACGGCGTCACGTTCGCTTCCGCCGACGTTATCACGTGGATGACCTCGTTCCGTCAATACGAGAAGAACACGGACCCCATGAGCGGTGTTTTCTCGGGGCACCATGTTATGGCCCTTGATATTAATGATTTCGAACAAGATAAGAGAAGTGGGGTTTTTCACATTGACGTCAGCCTCAACTTTGAGACTAGGTACAGGCTAGGTAACTTCATATTCGGCGACACCAAGCCCAGGGTCCACTGCGGTCTTCAGGTTCCTTTCGGCTCTAATGGGCTCACTCTCATTGCTTTTCGGCCCACTCATTTTCGAGGGACAGACACGATGGCCGACAAGGAACCTCAGTTTTCAAGCGCTGCTGCCACCTACGAAGCGCCGCCGCAGCGGCCGCCGCAAAAACGCAGCCGTGCCGCACAATGCTGCTGCTGCGCGTTCCAAAGCCTCTGCATCGTGCTCGGTTCAATCTTCGTTTTCTTGCTCTTCATTTTCCTCGTACTGTTCGTGTCCTATTTGATAATCCAACCGCGCCCCTTCAGGTTCCACGTGACCGAGGCCACGCTCTCGCAGTTCAACTACACTAAAACGGACAGCAGCCTCCGCTACAAAGTTGTCATCAACTTCACGGTGGAAAACCCTAACAATCGACTCAACATCTACTACGACCAGGTGGTGGCTCACGTGTCCTACCGCGGCGTCACGTTCTCTTCGGCGGACGTCGTCACCTGGCGGAACGCGTTTCGCCTGGGAACGGGGAGCACGGAGCGCTTGGGCGGCGCTTTCATGGGGCAGACCGTCGTGCCCTTCGATGACGAGCAGGCTAAGGATTTCGATGATGATAAGAAAAAAGGGATTTTCTTTTTTCTTGTGAGGCTCCGCTTTAACATTAGGTTCAGAATCGGTAGTAGCTTCAAATACCAAGACGTCAGACCCGGGGCCAAGTGTGGGCTTGATATTCCTTTGAGCCCTAATGGAACCGCCATCACCACTATGTGCGATGAGCGTCTAGGCACAAGATGCTGCTACTGCCTCTGCCATACCCTTTGGGTGTTTCTGGTCATCATAATCATCCTCGTCATGCTCGCGATTCTTGTCCTCTACATCATCATCACGCCGCGGTCCTTCATGTTCCACGTGACCCACGCTAACCTCACGCAGTTCGACTACGCCGCCGACAACAACACCCTACGCTACAACCTCGTACTCAACATCACCGCGCGAAACCCCAACAAGAAGCTCAAGATCTACTACGACGTCGTTCAGGCCAGCGCGCTCTACGAGGGAGTTAGGTTCTCCATCGCCGACGTCAATATCCCATGGAGTTCCTACCTTCAGGACAAAAAGGGCACCAACCAATTCAGCGCTCTTTTCTCAGGCCAACGTGTCATCGTGCTTGATCAAGATCAAATATCTAACTTCAACCAAGACACCAAAGATGGGGTTTTTCCTATTCGTATTAAGATTCGTTTTACTATTAGGTTCAGGCTTGATGCTCTTCAAATTGGGGACTACTATCCCAGAGCCACGTGTAAGCTCAAGCTTCCTCTCACTTCTAATGCGAAAAAGGACAACGCTGCAACAAACGACGGCGTTCGGTCGAAGGAGCGACTGGGCACAAGATGCTGCTACTGCCTCTGCCAAACCCTATGGGTGTTCCTGGTTCTCATAGTCATCATCGTAATGCTCGTGATTCTTGTCCTCTACATCATAATCACTCCTCGCTCCTTCAAGTTCCACGTGTCCAACCTGAGCCTCACGCAATTCGACTACACTTCCAACACCAACACCAACACCCTCCGCTACAACCTCGTACTCAACATCACGGCCCGCAACCCCAACAAGAAGCTCAAGATCTACTACGACATCGTTCAGGCCCACGCGCTCTACCAGCGCGTTGAGTTCTCCACAAGGGACGTGGACTTGCCCTGGAGGTCCTACCTTCAGGACAAGAAGGCCACCAATGTCTTCAGCGCCGTTTTCTCTGGACAACGTGTGATGATGCTGAATCGAAAACAGGAGTTTCGGTTCCAAGAAGATAATAAGGATGGGGTTTTCCCTATTGATATTAAGATTAAGTTTAGAATTAGGTTCAGGCTTGGGAATTTGCAGTCTGGGCACTTCAATGCCAGAGCCAAGTGTGAGCTTGATGCTCCTTTGGCTGATTCTAATGGAAAAACGATGGCTGCAGCGTTTCACTCCACCAAGTGT	2534	0.5154	MADTQPQLNDAVASNERERLHTRCCYCLFKTVWIILVLIIILVMVVILVLYIVIQPRSFKFHVTEATLSQFNYTANDNTLRYNLVLNFTARNPNKKLNFYYDQVVAHVSYDGVTFASADVITWMTSFRQYEKNTDPMSGVFSGHHVMALDINDFEQDKRSGVFHIDVSLNFETRYRLGNFIFGDTKPRVHCGLQVPFGSNGLTLIAFRPTHFRGTDTMADKEPQFSSAAATYEAPPQRPPQKRSRAAQCCCCAFQSLCIVLGSIFVFLLFIFLVLFVSYLIIQPRPFRFHVTEATLSQFNYTKTDSSLRYKVVINFTVENPNNRLNIYYDQVVAHVSYRGVTFSSADVVTWRNAFRLGTGSTERLGGAFMGQTVVPFDDEQAKDFDDDKKKGIFFFLVRLRFNIRFRIGSSFKYQDVRPGAKCGLDIPLSPNGTAITTMCDERLGTRCCYCLCHTLWVFLVIIIILVMLAILVLYIIITPRSFMFHVTHANLTQFDYAADNNTLRYNLVLNITARNPNKKLKIYYDVVQASALYEGVRFSIADVNIPWSSYLQDKKGTNQFSALFSGQRVIVLDQDQISNFNQDTKDGVFPIRIKIRFTIRFRLDALQIGDYYPRATCKLKLPLTSNAKKDNAATNDGVRSKERLGTRCCYCLCQTLWVFLVLIVIIVMLVILVLYIIITPRSFKFHVSNLSLTQFDYTSNTNTNTLRYNLVLNITARNPNKKLKIYYDIVQAHALYQRVEFSTRDVDLPWRSYLQDKKATNVFSAVFSGQRVMMLNRKQEFRFQEDNKDGVFPIDIKIKFRIRFRLGNLQSGHFNARAKCELDAPLADSNGKTMAAAFHSTKC	844

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g02611	844	PANTHER	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	16	196	-	-
	Pste4g02611	844	Pfam	Late embryogenesis abundant protein	88	190	IPR004864	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g02611	Pste-Chr4	18448844	18468317	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g02611	678	828	SNARE and Associated Proteins	AT1G32270	30.464	3.06e-14	73.2

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste4g02611	4	18448844	18468317	Pste4g02611	4	18448844	18468317	ECH
	Pste5g02413	5	16731738	16732427	Pste4g02611	4	18448844	18468317	PCT

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