Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02611 GCATGGCGGACACACAACCGCAACTGAACGACGCCGTTGCTTCAAACGAGAGGGAGAGGCTTCACACGCGATGCTGCTACTGCCTCTTCAAAACCGTGTGGATCATTCTGGTTCTCATAATAATCCTGGTCATGGTCGTCATTCTGGTCCTTTACATCGTAATCCAACCACGCTCCTTCAAGTTCCACGTCACCGAAGCCACACTCAGCCAATTCAACTACACCGCCAACGACAACACCCTCAGGTACAACCTCGTACTCAACTTCACCGCGCGAAACCCCAACAAGAAGCTCAACTTCTACTACGACCAAGTGGTGGCTCACGTGTCCTATGACGGCGTCACGTTCGCTTCCGCCGACGTTATCACGTGGATGACCTCGTTCCGTCAATACGAGAAGAACACGGACCCCATGAGCGGTGTTTTCTCGGGGCACCATGTTATGGCCCTTGATATTAATGATTTCGAACAAGATAAGAGAAGTGGGGTTTTTCACATTGACGTCAGCCTCAACTTTGAGACTAGGTACAGGCTAGGTAACTTCATATTCGGCGACACCAAGCCCAGGGTCCACTGCGGTCTTCAGGTTCCTTTCGGCTCTAATGGGCTCACTCTCATTGCTTTTCGGCCCACTCATTTTCGAGGGACAGACACGATGGCCGACAAGGAACCTCAGTTTTCAAGCGCTGCTGCCACCTACGAAGCGCCGCCGCAGCGGCCGCCGCAAAAACGCAGCCGTGCCGCACAATGCTGCTGCTGCGCGTTCCAAAGCCTCTGCATCGTGCTCGGTTCAATCTTCGTTTTCTTGCTCTTCATTTTCCTCGTACTGTTCGTGTCCTATTTGATAATCCAACCGCGCCCCTTCAGGTTCCACGTGACCGAGGCCACGCTCTCGCAGTTCAACTACACTAAAACGGACAGCAGCCTCCGCTACAAAGTTGTCATCAACTTCACGGTGGAAAACCCTAACAATCGACTCAACATCTACTACGACCAGGTGGTGGCTCACGTGTCCTACCGCGGCGTCACGTTCTCTTCGGCGGACGTCGTCACCTGGCGGAACGCGTTTCGCCTGGGAACGGGGAGCACGGAGCGCTTGGGCGGCGCTTTCATGGGGCAGACCGTCGTGCCCTTCGATGACGAGCAGGCTAAGGATTTCGATGATGATAAGAAAAAAGGGATTTTCTTTTTTCTTGTGAGGCTCCGCTTTAACATTAGGTTCAGAATCGGTAGTAGCTTCAAATACCAAGACGTCAGACCCGGGGCCAAGTGTGGGCTTGATATTCCTTTGAGCCCTAATGGAACCGCCATCACCACTATGTGCGATGAGCGTCTAGGCACAAGATGCTGCTACTGCCTCTGCCATACCCTTTGGGTGTTTCTGGTCATCATAATCATCCTCGTCATGCTCGCGATTCTTGTCCTCTACATCATCATCACGCCGCGGTCCTTCATGTTCCACGTGACCCACGCTAACCTCACGCAGTTCGACTACGCCGCCGACAACAACACCCTACGCTACAACCTCGTACTCAACATCACCGCGCGAAACCCCAACAAGAAGCTCAAGATCTACTACGACGTCGTTCAGGCCAGCGCGCTCTACGAGGGAGTTAGGTTCTCCATCGCCGACGTCAATATCCCATGGAGTTCCTACCTTCAGGACAAAAAGGGCACCAACCAATTCAGCGCTCTTTTCTCAGGCCAACGTGTCATCGTGCTTGATCAAGATCAAATATCTAACTTCAACCAAGACACCAAAGATGGGGTTTTTCCTATTCGTATTAAGATTCGTTTTACTATTAGGTTCAGGCTTGATGCTCTTCAAATTGGGGACTACTATCCCAGAGCCACGTGTAAGCTCAAGCTTCCTCTCACTTCTAATGCGAAAAAGGACAACGCTGCAACAAACGACGGCGTTCGGTCGAAGGAGCGACTGGGCACAAGATGCTGCTACTGCCTCTGCCAAACCCTATGGGTGTTCCTGGTTCTCATAGTCATCATCGTAATGCTCGTGATTCTTGTCCTCTACATCATAATCACTCCTCGCTCCTTCAAGTTCCACGTGTCCAACCTGAGCCTCACGCAATTCGACTACACTTCCAACACCAACACCAACACCCTCCGCTACAACCTCGTACTCAACATCACGGCCCGCAACCCCAACAAGAAGCTCAAGATCTACTACGACATCGTTCAGGCCCACGCGCTCTACCAGCGCGTTGAGTTCTCCACAAGGGACGTGGACTTGCCCTGGAGGTCCTACCTTCAGGACAAGAAGGCCACCAATGTCTTCAGCGCCGTTTTCTCTGGACAACGTGTGATGATGCTGAATCGAAAACAGGAGTTTCGGTTCCAAGAAGATAATAAGGATGGGGTTTTCCCTATTGATATTAAGATTAAGTTTAGAATTAGGTTCAGGCTTGGGAATTTGCAGTCTGGGCACTTCAATGCCAGAGCCAAGTGTGAGCTTGATGCTCCTTTGGCTGATTCTAATGGAAAAACGATGGCTGCAGCGTTTCACTCCACCAAGTGT 2534 0.5154 MADTQPQLNDAVASNERERLHTRCCYCLFKTVWIILVLIIILVMVVILVLYIVIQPRSFKFHVTEATLSQFNYTANDNTLRYNLVLNFTARNPNKKLNFYYDQVVAHVSYDGVTFASADVITWMTSFRQYEKNTDPMSGVFSGHHVMALDINDFEQDKRSGVFHIDVSLNFETRYRLGNFIFGDTKPRVHCGLQVPFGSNGLTLIAFRPTHFRGTDTMADKEPQFSSAAATYEAPPQRPPQKRSRAAQCCCCAFQSLCIVLGSIFVFLLFIFLVLFVSYLIIQPRPFRFHVTEATLSQFNYTKTDSSLRYKVVINFTVENPNNRLNIYYDQVVAHVSYRGVTFSSADVVTWRNAFRLGTGSTERLGGAFMGQTVVPFDDEQAKDFDDDKKKGIFFFLVRLRFNIRFRIGSSFKYQDVRPGAKCGLDIPLSPNGTAITTMCDERLGTRCCYCLCHTLWVFLVIIIILVMLAILVLYIIITPRSFMFHVTHANLTQFDYAADNNTLRYNLVLNITARNPNKKLKIYYDVVQASALYEGVRFSIADVNIPWSSYLQDKKGTNQFSALFSGQRVIVLDQDQISNFNQDTKDGVFPIRIKIRFTIRFRLDALQIGDYYPRATCKLKLPLTSNAKKDNAATNDGVRSKERLGTRCCYCLCQTLWVFLVLIVIIVMLVILVLYIIITPRSFKFHVSNLSLTQFDYTSNTNTNTLRYNLVLNITARNPNKKLKIYYDIVQAHALYQRVEFSTRDVDLPWRSYLQDKKATNVFSAVFSGQRVMMLNRKQEFRFQEDNKDGVFPIDIKIKFRIRFRLGNLQSGHFNARAKCELDAPLADSNGKTMAAAFHSTKC 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02611 844 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 16 196 - -
Pste4g02611 844 Pfam Late embryogenesis abundant protein 88 190 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02611 Pste-Chr4 18448844 18468317 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02611 678 828 SNARE and Associated Proteins AT1G32270 30.464 3.06e-14 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02611 4 18448844 18468317 Pste4g02611 4 18448844 18468317 ECH
Pste5g02413 5 16731738 16732427 Pste4g02611 4 18448844 18468317 PCT