Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02609 GAATCTTTGGTTTTATTTTTATTCATTCCACTTTGTGCTTTACCCTATCTATCTTCTTTCTCTTTTATTTCTTGATCACTGAGCATGGATGGAATTTAAAATAAAGTTTGGTTTATTTGCAGCTCCTCTCTCTTCTAAGGTGTCAGTTGTGACATCCTCTTAGCGACCAGAGTGGATCATTTATTAATCTAGTGGCCCTTTGATGATATATTAAGTTCTGGGCTGTGGATATATTAGAACAAATGTCCTTCCGCAGTATAGTTCGTGACGTAAGGGATGGATTTGGAAGCTTATCCAGAAGGAGTTTTGAGGTTAGGCTTCCTGGTCATCACAGAGGCAAGTCACGCAGTTCGGTTCATGAATTGATAGAGCAGCAACCAGTTATACAGAGCAGCCGCTGGGCTAGCCTTCCGCCCGAGCTTCTTCGAGATGTTATTAATAGATTGGAGGCAAGTGAGAGTACATGGCCTGGTCGTAAGCATGTGGTTGCATGCGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTTCCCTAAAGCAGCCTGGGTATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACTAGAAGAACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACTTATATTGGAAAACTCAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAACCTCCCTACAACAATGCTATGCTGTCTCCACCTGGCCGTAGCCGAAGGTTTTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCACCTACAATATTGCACAGGTCACCTATGAATTGAATGTCCTTGGTACTCGAGGGCCACGAAGGATGAATTGCACAATGTACTCAATTCCTGCATCAGCACTCGAGCCTAATGGCATTGTCCCAGGCCAGCCTGAGCTCCTTCCCCGTGCCCTTGAGGACTCTTTCCGGAGTATATCCTTTTCAAAATCTATTGACAATTCAACTGAGTTTAGCAGCTCTAGGTTCTCAGACATAATGGGAATTGGCAATGATGAGGAGGAGGGAAAGGTGAGACCACTAGTTCTCAAGAACAAGTCTCCAAGATGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTTAGAGGTAGGGTCACCGTTGCCTCTGTCAAAAATTTTCAGTTGATTGCCTCAACACCACCAGCAGCCAGTGCTCCTTCAGCAACAGGACCTACACCATCTCAGCCAACACAATCTTCTGATCATGACAAGATTATCCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGATACCCCCTCTCTGCATTTCAGGCATTTGCCATATGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAGTTTACAAGAGATATGTGTGGTAAGAAAAATAGGGTATAATATCCATTTTAGATGTTTGTAGGAATATTTAAGCTTCATTAAGTCAATTGTTCTCCTCATGGTTAAATTGTAAAGTATGGAACTATCTCTGCCCAGTGAACCTTCTTTCTTTCTCGCTATGGCCCTTTTTCTTTTGAACATGTTTCTTTTTTCATGCCATTGCCTTTCTTTTGGACAGTTAATTTACTATGCTTAAAGTTTTGAACTATCTTTGTCAAACTTTGACGATGTAGATTTCCATACTTTGTATAAAGATGTAATGAAATTTTATTGGCAT 1848 0.4156 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGKSRSSVHELIEQQPVIQSSRWASLPPELLRDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMNCTMYSIPASALEPNGIVPGQPELLPRALEDSFRSISFSKSIDNSTEFSSSRFSDIMGIGNDEEEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTPPAASAPSATGPTPSQPTQSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02609 429 MobiDBLite consensus disorder prediction 365 385 - -
Pste4g02609 429 Gene3D Tubby Protein; Chain A 110 429 IPR025659 -
Pste4g02609 429 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Pste4g02609 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Pste4g02609 429 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Pste4g02609 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pste4g02609 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pste4g02609 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Pste4g02609 429 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Pste4g02609 429 PANTHER TUBBY-RELATED 33 427 - -
Pste4g02609 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Pste4g02609 429 FunFam Tubby-like F-box protein 110 429 - -
Pste4g02609 429 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Pste4g02609 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Pste4g02609 429 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Pste4g02609 429 FunFam Tubby-like F-box protein 48 101 - -
Pste4g02609 429 Pfam Tub family 114 424 IPR000007 -
Pste4g02609 429 Pfam F-box domain 53 100 IPR001810 GO:0005515
Pste4g02609 429 CDD F-box_AtTLP-like 53 97 - -
Pste4g02609 429 Gene3D - 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02609 Pste-Chr4 18428750 18431835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02609 1 429 TUB Transcription Factor Family AT1G76900 68.627 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste4g02609 Tub 6.7e-115 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01016 9 6702985 6707162 Pste4g02609 4 18428750 18431835 PCT