Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02594 AGCCTAGGAGCAGTGTTCATCTACTGAGCCGCATCACTTCTCGGAATCGTGCATCCCACCATTCAACATGTCCCTTGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGAACGTAGATGGGAAGCAGAAGATAATGTTCGCCCTTACCTCAATCAAAGGCATAGGGAGGCGATTTGCTAACATGGCTTGCAAGAAGGCCGATGTTGACATGAACAAAAGTGTTATGGCTTTGTTGGAATTTGGTTCTGGTGGCTGTGGAATTGGTTTTTCATGGTTTGTTACAGAAATGGGTTTTGGTTATTTTGTTGGCAGAGCTGGTGAACTCACTGCTGCTGAGTTGGATAATATCATGACTGTGGTTGCCAACCCCCGGCAATTCAAGATTCCGGACTGGTTTTTGAACAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTGGTGTCAAATGCACTTGATATGAAGTTGAGGGATGACTTGGAGAGACTCAAGAAAATCAGGAACCATCGGGGTTTGAGACATTACTGGGGTCTTCGTGTACGAGGTCAGCATACAAAGACTACTGGTCGGAGGGGTAAAACTGTTGGTGTCTCTAAGAAGCGCTGAGCTCTCACTTTCTTTTTTACTCTTTTTAAAAAATGAGATATATTATTGCTTAGTTAAAGTCAACTTGAGTTTCAACGTTGATCTTGATGAGGTTGGTTTATCTTATTTTTTTACTTACGTATCTTGTGTCTTTTTGGTCCAATTTTTGCTGGAGGCCATGTTGATTTGATGATTTCCGTTAATATGGCTTAATCTCGAGCAAGATTAATGATTATTACCTATCTAATGAAGCATAACGTTCCTGTGCAATTATTATAAGA 879 0.4152 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANMACKKADVDMNKSVMALLEFGSGGCGIGFSWFVTEMGFGYFVGRAGELTAAELDNIMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02594 183 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 75 183 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02594 183 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 4 62 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02594 183 FunFam 40S ribosomal protein S18 1 61 - -
Pste4g02594 183 SUPERFAMILY S13-like H2TH domain 85 183 IPR010979 GO:0003676
Pste4g02594 183 ProSitePatterns Ribosomal protein S13 signature. 152 165 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02594 183 SUPERFAMILY S13-like H2TH domain 13 58 IPR010979 GO:0003676
Pste4g02594 183 Hamap 30S ribosomal protein S13 [rpsM]. 12 183 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02594 183 Gene3D 30s ribosomal protein s13, domain 2 123 173 IPR027437 -
Pste4g02594 183 ProSiteProfiles Ribosomal protein S13 family profile. 15 176 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02594 183 Pfam Ribosomal protein S13/S18 86 173 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02594 183 Pfam Ribosomal protein S13/S18 14 59 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02594 183 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 2 183 - -
Pste4g02594 183 Gene3D - 1 61 - -
Pste4g02594 183 FunFam 40S ribosomal protein S18 123 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02594 Pste-Chr4 18312398 18314634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02594 1 183 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 78.142 1.57e-100 285