Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02580 ATTGACGCTAACGATAATGGCAACACCATCTTCAACTCGAGCACCATGCTTAGCTTTCTGGCTGAATCCGCTTATCGTCTTGTTCTCACTGTGTTCCGGGGTCGCGTGCGCCTTCTCGCGGCCGACAACTTCACCTTTGGGTTTGATCTTTGTGTTAATGTTTCTGCCACGGTGCTACCACAGTTTCCATACTTGAGATTTCAACTAGCCGAGAAAGAGGTTGCGAGGGTGTTAGGGAGGGTGGTTCGAGGGAGTAAAGGAAGATTGAGTGACTTGGCCGAAAATGAAAACAAAGTGAATAAAAGAAATGAAAGAAGAGAGAATGAACCAAACATGTCCTTAGTTGGTGGACGTGGAAGCAGTTTAAAGAAGCGCGCCAATATCTCATTCCCTTTCCTTTTACATGGAATGGCAGATCTTTCTACCTATGGGAGTCATGAGCGTGACATTGAGCAAGCGTTCATTATTTTAAAAAAGGGCACTCAGTTAGTAAAGTATAGTCGAAAAGGAAAGCCAAAATTTTGTTCATTCAGGCTCTCATCGGATGAAACAAAACTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTAAAGTTGGCTTTTGTTTCACACATCATCCCAGGACAGAGAACGGCTGTCTTTAGAAGATACTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAGGGGGAACGATCACTTGATCTGATTTGCAAGGACCAAGCTGAGGTGGAGGTATGGTTTTCAAGCCTTAAGGCTTTAATTTCTACTGGGGAGCGTATTAAGCGTGGAATAAGTGATTTAAGCAATGTGAGTTCTAATAGAAATTGCTTAAATGATGGTTTAATTTTCAACTCTCTTAGTTTACATGATAGTGCTGACATTCCTTATGCTGGATCACTAGAGTTTGCATCAAGCATTGCCCGTCGCAGGTTTTCTTTTGAATCGGTGTCTCATGAATCTACATCATCTTGGTCAAGATCAGAAACAAATATGCCACTAAGGACAAGTATTGGAGATGGTTCTCGTGTTAGTGTATCAAGTCTTAGCCAAAGTAGTGTAGGATCAGGACTAGATGACATCGAATCTCTAGGTGATGTTTATATATGGGGAGAGGTGTGGGCAGATGGCAATTCATCTGATGGATTGGGGAGTCAAGCCTCTTGTAAGACGGATGTTCTGATTCCTAAGCTATTGGAGTCTGATGTTGTTCTTGATGTTCATCAGATTGGACCAGGTGCACGTCACATTGCACTAGTTACAAGGCAAGGAGAGGTTTTTACATGGGGTGAGGAATCTGGTGGAAGACTTGGTCATGGGTTTGAAAAAGATTTTGGTCGACCTCAGCTTGTGGAGTCCCTGGCAATTACCAATGTGGCTTTTGTTGCATGTGGTGAATATCATTCTTGTGCTGTGTCTGCATCTGGTGACCTATTCACCTGGGGTGATGGTACACATAGTTCAGGACTTCTTGGTCATGGGACTGATGTTAGCTACTGGATACCAAAGAAGATCGGTGGTCCTTTAGATGGACTTCAAGTTGTATCTGTAGCATGTGGCTCATGGCATTCAGCTTTAGCAACCTCCTTTGGGAAGTTGTTTACCTTTGGTGATGGAAGATTTGGTGTATTGGGTCATGGAGATCGAGAGAGTATCTGTTATCCAAAGGAGGTACAATTATTGAGTGGACACAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACACAGCCGCCATTATAGAGTGTATGGATCCAAATGGTTCAAATGCTTCATCCAAGAGGATCTTCACATGGGGTGATGGTGACCAATATCGTTTAGGTCATGTTAACAAGGAAACTTACCTGCAACCAACTTGTGTAACTGCACTTGCTGATTATAGTTTTGAACAGATTGCATGTGGGTACACTATGACTGTTGCACTCACTGTATCTGGTCATGTGTTTACTATGGGAGGCACAACATATGGTCAACTAGGAAATCCAAATTCTGATGGGAAGGTGCCAATTCTAGTCCGAGATAAATTAGTAGGTGAATTTGTGGAAGAAATATCATGTGGGGCGCATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGAAGAGGTGTCAATGGAAGATTAGGACATGGAGACACAGAAGACCAGAAAACTCCAACATTGGTGGAAGCCTTGAAAGATAGGCATATTAAGAATATCTCATGTGGCTCGAACTTCACAACTTGTATATGCATACATAAGTGGGTTTCTGGAGTTGACCAATCTGTTTGCTCTGGTTGTCGACAACAATTTGGTTTTACTCGAAAAAGGCATAATTGCTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCTTTAAAAGCAGCACTGGCTCCGACACCTAGCAAACCACATCGGGTATGTGATGCTTGTTATGCCAAACTAAAAGGTTCTGATAGTGCTTCCAATTTTAATAGAGAAATAAGTCGTCCTTCTAGTTCCATATATGGAAGGGAAAAATTTGACCGGGGAGAAGTAAAGTCTTCAAGAGTTCTCTTGCCTCCCATCACAGAACCGGTTAAATACCTTGAGATTAGGAATAATAGGATTGGAAATATACCTGACTCTTCTTCAATAGTCCGAGCTGCTCAAGTTCCTACAAGTTTACAATTGAAAGATGTTGCATTTCCAACTTCATTGAGTTCTGCGCAGAATGTTTACAAGCCTGTTATACAGCCAACTCAACCTCCGACTCCATCAACATCAACTACTCCAAGACCTGCGTCACCATATGCTAAAAGGCCACCTAGCCCATCACGTTCTACTTCCCCTGGATTTTCAAGAAGCATTATCGATAATTTAAGGAAGAAAAATGATCATTTGAGTCAAGAAGTCTCAAAATTGCAAAACAAAAATCAAAGTTTGAAGCTGAAGAATGACATGCAAGATATGAAGATTCAAGAGCTTCAGAAAAATATTGAAGAAGTCATGTCACAAGTTGGAGATAAATCTTCTAAGCTTAGAGAAGCTAAGGAATTTATTAAATCCATGGGATATAAGTTGAGGGAAGTGATTGAGAAGTTGCCACCTGAGATTTCTGACAATGAGACCTTGACAACCATGCATGCTCAAGCTGAAGAATTTCTTTGTAATGAAGAAAAAGATTTTGAATCTTCTAGACTTGAGTCTGAGCAACAAAGTACACCTGATGTACCTGCCTCAGATACTGTCTCTTCAAAACTGCAACAGCAAACAATGAAAGGAGACGTTGATGCTTCTGGGGTTGCTCCATTGATGGATGGAGAAAACACTCTTGAAGAAAGCAGAAATTTATCTGTATCTAGTTCAGTAATTACTCCACCAAGCTTAGGAAATAGTTCAACATTACGTGACCCTGGTATATCTGTGAATCCGCCAAGCTCAGAAGGAGAAAGATCAGTCATCGAACAATTTGACCCAGGTGTTTATGTCACACTCGTAGTACTGCCTAGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAATGAGCAGCAAGCAGAAGAATGGTGGAACCAAAACAAAGATAAGGTGCTCGGTAAATACAGTCCACCTGTCACAAAAAATTCAATTAGTGGATCATCTATTACCCCTGCACTCTCTGAAGAGAATGTTGAGGCGTTACCTTCTTCATAA 3696 0.4115 IDANDNGNTIFNSSTMLSFLAESAYRLVLTVFRGRVRLLAADNFTFGFDLCVNVSATVLPQFPYLRFQLAEKEVARVLGRVVRGSKGRLSDLAENENKVNKRNERRENEPNMSLVGGRGSSLKKRANISFPFLLHGMADLSTYGSHERDIEQAFIILKKGTQLVKYSRKGKPKFCSFRLSSDETKLIWISHGKEKNLKLAFVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEVWFSSLKALISTGERIKRGISDLSNVSSNRNCLNDGLIFNSLSLHDSADIPYAGSLEFASSIARRRFSFESVSHESTSSWSRSETNMPLRTSIGDGSRVSVSSLSQSSVGSGLDDIESLGDVYIWGEVWADGNSSDGLGSQASCKTDVLIPKLLESDVVLDVHQIGPGARHIALVTRQGEVFTWGEESGGRLGHGFEKDFGRPQLVESLAITNVAFVACGEYHSCAVSASGDLFTWGDGTHSSGLLGHGTDVSYWIPKKIGGPLDGLQVVSVACGSWHSALATSFGKLFTFGDGRFGVLGHGDRESICYPKEVQLLSGHKAIKVACGVWHTAAIIECMDPNGSNASSKRIFTWGDGDQYRLGHVNKETYLQPTCVTALADYSFEQIACGYTMTVALTVSGHVFTMGGTTYGQLGNPNSDGKVPILVRDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGVNGRLGHGDTEDQKTPTLVEALKDRHIKNISCGSNFTTCICIHKWVSGVDQSVCSGCRQQFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDACYAKLKGSDSASNFNREISRPSSSIYGREKFDRGEVKSSRVLLPPITEPVKYLEIRNNRIGNIPDSSSIVRAAQVPTSLQLKDVAFPTSLSSAQNVYKPVIQPTQPPTPSTSTTPRPASPYAKRPPSPSRSTSPGFSRSIIDNLRKKNDHLSQEVSKLQNKNQSLKLKNDMQDMKIQELQKNIEEVMSQVGDKSSKLREAKEFIKSMGYKLREVIEKLPPEISDNETLTTMHAQAEEFLCNEEKDFESSRLESEQQSTPDVPASDTVSSKLQQQTMKGDVDASGVAPLMDGENTLEESRNLSVSSSVITPPSLGNSSTLRDPGISVNPPSSEGERSVIEQFDPGVYVTLVVLPSGYKVFKRIRFSKRRFNEQQAEEWWNQNKDKVLGKYSPPVTKNSISGSSITPALSEENVEALPSS 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02580 1231 MobiDBLite consensus disorder prediction 94 118 - -
Pste4g02580 1231 MobiDBLite consensus disorder prediction 910 951 - -
Pste4g02580 1231 MobiDBLite consensus disorder prediction 915 937 - -
Pste4g02580 1231 Gene3D Acid Proteases 1 81 IPR021109 -
Pste4g02580 1231 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 649 700 IPR000408 -
Pste4g02580 1231 MobiDBLite consensus disorder prediction 1108 1147 - -
Pste4g02580 1231 SUPERFAMILY RCC1/BLIP-II 369 754 IPR009091 -
Pste4g02580 1231 Pfam FYVE zinc finger 753 818 IPR000306 GO:0046872
Pste4g02580 1231 SUPERFAMILY PH domain-like 150 259 - -
Pste4g02580 1231 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 597 648 IPR000408 -
Pste4g02580 1231 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 479 IPR000408 -
Pste4g02580 1231 MobiDBLite consensus disorder prediction 1202 1231 - -
Pste4g02580 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 755 829 IPR013083 -
Pste4g02580 1231 Gene3D - 491 754 IPR009091 -
Pste4g02580 1231 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 193 1025 - -
Pste4g02580 1231 SUPERFAMILY Acid proteases 5 71 IPR021109 -
Pste4g02580 1231 Gene3D - 316 490 IPR009091 -
Pste4g02580 1231 Pfam Regulator of chromosome condensation (RCC1) repeat 535 583 IPR000408 -
Pste4g02580 1231 Pfam Regulator of chromosome condensation (RCC1) repeat 428 476 IPR000408 -
Pste4g02580 1231 Pfam Regulator of chromosome condensation (RCC1) repeat 648 697 IPR000408 -
Pste4g02580 1231 Pfam Regulator of chromosome condensation (RCC1) repeat 598 645 IPR000408 -
Pste4g02580 1231 Pfam Regulator of chromosome condensation (RCC1) repeat 479 530 IPR000408 -
Pste4g02580 1231 Pfam Regulator of chromosome condensation (RCC1) repeat 702 749 IPR000408 -
Pste4g02580 1231 Coils Coil 89 109 - -
Pste4g02580 1231 Gene3D - 149 267 IPR011993 -
Pste4g02580 1231 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 701 752 IPR000408 -
Pste4g02580 1231 CDD PH_PLC_plant-like 148 260 - -
Pste4g02580 1231 MobiDBLite consensus disorder prediction 94 111 - -
Pste4g02580 1231 Pfam Transcription factor regulating root and shoot growth via Pin3 1148 1202 IPR013591 -
Pste4g02580 1231 PRINTS Chromosome condensation regulator RCC1 signature 521 537 IPR000408 -
Pste4g02580 1231 PRINTS Chromosome condensation regulator RCC1 signature 537 551 IPR000408 -
Pste4g02580 1231 PRINTS Chromosome condensation regulator RCC1 signature 696 717 IPR000408 -
Pste4g02580 1231 PRINTS Chromosome condensation regulator RCC1 signature 430 446 IPR000408 -
Pste4g02580 1231 PRINTS Chromosome condensation regulator RCC1 signature 480 496 IPR000408 -
Pste4g02580 1231 PRINTS Chromosome condensation regulator RCC1 signature 638 656 IPR000408 -
Pste4g02580 1231 MobiDBLite consensus disorder prediction 1057 1148 - -
Pste4g02580 1231 MobiDBLite consensus disorder prediction 1065 1092 - -
Pste4g02580 1231 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 757 819 IPR017455 -
Pste4g02580 1231 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 534 IPR000408 -
Pste4g02580 1231 SUPERFAMILY FYVE/PHD zinc finger 753 823 IPR011011 -
Pste4g02580 1231 MobiDBLite consensus disorder prediction 1205 1231 - -
Pste4g02580 1231 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 573 583 IPR000408 -
Pste4g02580 1231 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 535 586 IPR000408 -
Pste4g02580 1231 FunFam PH, RCC1 and FYVE domains-containing protein 1 341 588 - -
Pste4g02580 1231 Coils Coil 954 1009 - -
Pste4g02580 1231 ProSiteProfiles BRX domain profile. 1148 1203 IPR013591 -
Pste4g02580 1231 SMART fyve_4 751 820 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02580 Pste-Chr4 18220991 18231627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02580 1145 1203 Major Intrinsic Protein MIP AT1G31880 40.678 4.91e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02580 4 18220991 18231627 Pste4g02580 4 18220991 18231627 ECH