Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02577 TTCCCTCCACATCTATCCGAAACCAAATTCCCTCCTTCCCTCGTTTTCTGCTCTCGCCTCCTCTACGCTCCTAACGCACTCTTTCTCTTCCAAACCCTTTTCTCTTCCCTCTCTCTCTCTCTAAATCCCACACTTTCTCTCTCTAAAACCCTACTCCCTTTCCATCCTCTCCCTTTTCCCTCCAATTCGTCTGTTTCTCGCCTCATGTCCGCCGCCAGAGCTCCCGACCGCCGAGCCTCGCCGCCGCAGGGGGCTGCCGGCTCCACTGCCAGCGTCCGCCCGCCCCTCAAACGCCACCTCGCCTTCATGACCAAACCGCCCTTCGCCCCTCCCGACGAGTACCACAGCTTCTCCAGTACGGACTCCCGCCGCCCCGCCGATGAAGCCGTCGTCGTTAGATCTCCGTACATGAAGCGGAAGAGTGGAGTGAATGATACTGAAGGAGAGTCACAATCACAAAAGTGGAGCAACAGCCCTGGATACACTAACGTTAGTAATGTAACAAATAGTCCCTTTAAAACTCCTGTGTCTGCAAAAGGGGGAAGGACTCAGAAGGCAAAGGCTTCCAAAGAAGGTAGATCATGTCCTCCAACACCCATCTCAAATGCTGGTTGCTCTTCTCCTCTTACTCCTGCTAGCAACTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTAAAGCATGCAGAGGATGGTATTCTTGACCTAAACAAAGCAGCGGAAACTTTGGAGGTACAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATCGGTCTCATTGAAAAAAATCTCAAGAACAGAATACATTGGAATATCAGCAAAATTCTTACATCAAGCCTTGTGAAATACAGGGGGATTGAATCTTCTACGTCTGGCGAGGTGGATGGTGATATCTCTGTGCTTAAGGCAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAAGCTGAGGAATTTGAGTGAAAATGAAAACAACCGGAAGTGTCTTTTCGTGACTGAAGAAGATATTAAGGCCCTACCTTGCTTCCAGAATGAAACTCTAATAGCAATTAAAGCTCCGCATGGAACCACCCTGGAAGTCCCTGATCCTGAGGAAGCTGCAGACTATCCACAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCGTTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGATGCCGAGCTCCCCATGATCCCACTTGCTTCCAGTTCTGGGTCCAATGAGCAATTAGTGACAGAAATAGTTCCTGCTGAATGCAGCGGAAGAGACCTTGAACCTCAAACTCAGCTCTCTTCACATGCATACTCTGATCTAACTACTTCACAGGAGTTTGCTGGTGGCATGATGAAGATCGTCCCTTCAGATGTTGATAATGATGCAGATTATTGGCTTCTATCTGACGCTGACGTTACCAGTGTTGATTGGAATGGGGTAGATATGCTTCATCCTGATTTTGGAATCATTTCGAGGCCTGAAACTCCATCATCTGGGTTTGCTGAAGCGCCCCAAACAGGAGCAAACTCTAATCTGAAGTGATTTCTATCAGTACTGTCAGAAAGTATGGATGAACTTCATCCTTTGCACAGACGTAAACTACTTCAATGAAGTCTTGCTAGGCCTTGAGGATGTCAGGAGCAGTTGAATGTCAAAAGCTGAGTGGTTGCTTTACTTAAAGTTAAATCATTGACTCTGACAAATAAAGTTAGTTACAGTAGGCATATACTATGCTCGTAGAGGATTTAGCTTTGAATGTAGAGCAGTTGGGATAAGTTTTTATTACAGAAAATGTTGCTACTGTATGAAATGTAAACAAAGCAGTATCGTAATATTGTCATATAATTAGCCATTTTTGAAGTCTGGAATCGAGGTTACAGTTTTTTGAAGATGAGAGCAGCTACTACGTATATGCTGACTACAAACATTAGCTGTACTGGATAATGTTAGGATAGGACCACCTCGTTATTGATTTATCATTCATGTTGCTTGTAAACAATTTCATAATCATTGATCAGTCTAATGATAAAATCATGTCAATTATTT 2127 0.4391 FPPHLSETKFPPSLVFCSRLLYAPNALFLFQTLFSSLSLSLNPTLSLSKTLLPFHPLPFPSNSSVSRLMSAARAPDRRASPPQGAAGSTASVRPPLKRHLAFMTKPPFAPPDEYHSFSSTDSRRPADEAVVVRSPYMKRKSGVNDTEGESQSQKWSNSPGYTNVSNVTNSPFKTPVSAKGGRTQKAKASKEGRSCPPTPISNAGCSSPLTPASNCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNLKNRIHWNISKILTSSLVKYRGIESSTSGEVDGDISVLKAEVEKLSLEEQGLDDQIREMQEKLRNLSENENNRKCLFVTEEDIKALPCFQNETLIAIKAPHGTTLEVPDPEEAADYPQRRYRIILRSTMGPVDVYLISQFEEKFEEINDAELPMIPLASSSGSNEQLVTEIVPAECSGRDLEPQTQLSSHAYSDLTTSQEFAGGMMKIVPSDVDNDADYWLLSDADVTSVDWNGVDMLHPDFGIISRPETPSSGFAEAPQTGANSNLK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02577 540 SUPERFAMILY "Winged helix" DNA-binding domain 216 279 IPR036390 -
Pste4g02577 540 MobiDBLite consensus disorder prediction 146 177 - -
Pste4g02577 540 Coils Coil 307 344 - -
Pste4g02577 540 Pfam E2F/DP family winged-helix DNA-binding domain 218 280 IPR003316 GO:0005667|GO:0006355
Pste4g02577 540 SUPERFAMILY E2F-DP heterodimerization region 307 411 IPR037241 -
Pste4g02577 540 MobiDBLite consensus disorder prediction 70 207 - -
Pste4g02577 540 Pfam E2F transcription factor CC-MB domain 310 410 IPR032198 GO:0046983
Pste4g02577 540 Gene3D - 210 282 IPR036388 -
Pste4g02577 540 MobiDBLite consensus disorder prediction 525 540 - -
Pste4g02577 540 FunFam E2F transcription factor 1 210 283 - -
Pste4g02577 540 SMART E2F_TDP_2 216 281 IPR003316 GO:0005667|GO:0006355
Pste4g02577 540 MobiDBLite consensus disorder prediction 521 540 - -
Pste4g02577 540 CDD E2F_DD 307 411 IPR032198 GO:0046983
Pste4g02577 540 Gene3D - 301 411 - -
Pste4g02577 540 PANTHER TRANSCRIPTION FACTOR E2F 144 501 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02577 Pste-Chr4 18211539 18216748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02577 92 537 E2F-DP Transcription Factor Family AT2G36010 52.411 3.47e-144 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pste4g02577 E2F_CC-MB 2.3e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02577 4 18211539 18216748 Pste4g02577 4 18211539 18216748 ECH