Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02565 ATGATCCTCACGCGATCGGTGTGGGCTTCAAACCTTGAATCGGAGTTTGACTTGATTGGTTCTCTGGTTGACACCTACCCTCTCATCTCAATAGACACTGAATTTCCCGGCGTGGTTGTTCAGTCCGATCCTGCTCTCCGGCACCGACCAGAGTACAACTATAGAGTAATGAAAGCTAACGTGGACCGCCTGCACCTGATTCAGCTAGGTCTCACCCTTTCTGATTACGAGGGTAACCTTCCAAGTTTCCGAACCTCAAACTCCTTCGTTTGGGAATTCAACTTCTGCGAATTCGACGTTGGTTCTGATCTCTACGCGCCTGATTCCATTGAGCTTCTCCGTGGTCAAGGCATTGATTTCGAGAGCAACCACGAGTTTGGAGTCCAAATTCAACGTTTTGCTGAGCTGATGAAACAATATAGACTCGTCTGTAACCCTAATATTCAATGGATCACTTTTCATGGTGCCTCTGACTTTGGGTATCTTGTGAAAGCACTCACTTCTCACGGTGTTTTGCCTCAAAGCATCCACGATTTTATCCATCTGGTTAAGTATTTCTTTGGACTCAGAGTTTATGACGTGAAGCACTTGATCAAGTTTTGCCCTAATCTTTATGGAGGATTGGAGAAAGTTGCTGGCTCTTTGAATTTGAAGCGTGCGCATGGCGAGAGTCACCAAGCTGCATCTGACAGTTTGCTTACTTTGAAGGTTTTTATGAAGATTAATGAGATGTATTTTGAGAGAGATAATGATCAAAACATGTTATTGAAATTAGCAGGTTCAACTGCAAATATCAGCAATGTGAGATCCTCGTCTTCATGGGCATGGCCATCGTGCCACCAACCCAAAACGCCGTCGTTCAGAGTGACCCCCGACGCCGTTAACTCGGTGGCGGAAACAACGGAATCGTTTTTCACGGAGTCTCCGAACTCGGCGAGCTTCTCAACGGCGTCGGAGATATCGCGGGGGGTGGACCCAACGGAGACGGTGATTCGAGGGCTGCGTTCGGATCGGCTTTTCTTCGAACCCGACGAGACGAGTTCCATAATGGAGGCAAAACTCGCAGTCACAACCATCGTGCCGTTCAAAAACAGCGTCGTTTTGTCCATCAACTCAAACGACCCTTACGTGGATTTCCGCAACTCAATGGAGGAGATTGTTCACACTCTCGGCCTCAACGATTGGGAGAGCCTCGAGGAGCTTCTCTGCTGGTACCTTAAATTCAACGAAAAGAACAACCACGAATACATCGTTGTTGCTTTCGTTGATTTGTTGTTCGATCTCACTTTATCCAATTCGCCGCCATCTTCCCCCCAAGAACATTCTCGCCCTTCTTCTCCTTTATTTTTTAACACTTCTTCTTCCTCTCTCTCTTCTTCTTGTAGCACTCGCTGTGTTTATTGTTTAGAACGCGACGTGGAGAAGAAGGAAGAGGAATGTGGTGTTTCTGCAGCTTCTTCTTTTTCTTCGGAACAAGTTAAGGATGAGATTACACCTCAAGATCAAGCATCCTGTTCATCTTCCAAGAACTGA 1533 0.4651 MILTRSVWASNLESEFDLIGSLVDTYPLISIDTEFPGVVVQSDPALRHRPEYNYRVMKANVDRLHLIQLGLTLSDYEGNLPSFRTSNSFVWEFNFCEFDVGSDLYAPDSIELLRGQGIDFESNHEFGVQIQRFAELMKQYRLVCNPNIQWITFHGASDFGYLVKALTSHGVLPQSIHDFIHLVKYFFGLRVYDVKHLIKFCPNLYGGLEKVAGSLNLKRAHGESHQAASDSLLTLKVFMKINEMYFERDNDQNMLLKLAGSTANISNVRSSSSWAWPSCHQPKTPSFRVTPDAVNSVAETTESFFTESPNSASFSTASEISRGVDPTETVIRGLRSDRLFFEPDETSSIMEAKLAVTTIVPFKNSVVLSINSNDPYVDFRNSMEEIVHTLGLNDWESLEELLCWYLKFNEKNNHEYIVVAFVDLLFDLTLSNSPPSSPQEHSRPSSPLFFNTSSSSLSSSCSTRCVYCLERDVEKKEEECGVSAASSFSSEQVKDEITPQDQASCSSSKN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02565 510 MobiDBLite consensus disorder prediction 483 510 - -
Pste4g02565 510 Pfam CAF1 family ribonuclease 7 129 IPR006941 -
Pste4g02565 510 SUPERFAMILY Ribonuclease H-like 2 249 IPR012337 -
Pste4g02565 510 Gene3D - 1 267 IPR036397 GO:0003676
Pste4g02565 510 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4 251 IPR039637 GO:0004535|GO:0030014
Pste4g02565 510 Pfam Transcriptional repressor, ovate 372 428 IPR006458 -
Pste4g02565 510 MobiDBLite consensus disorder prediction 477 510 - -
Pste4g02565 510 NCBIfam uncharacterized plant-specific domain TIGR01568 367 429 IPR006458 -
Pste4g02565 510 ProSiteProfiles OVATE domain profile. 368 427 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02565 Pste-Chr4 18084961 18093605 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pste4g02565 CAF1 8.5e-09 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02565 4 18084961 18093605 Pste4g00564 4 4318529 4319257 ECH
Pste4g02565 4 18084961 18093605 Pste4g02565 4 18084961 18093605 ECH