Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02562 AAAGGGTGCAATTAATAAAAGAATGGACAAAGGAGGAAAAGGCAAAGATGAAGAAAACCATGTTAAGTACAGAGGGGTACGTAGGAGGCCATGGGGAAAATTTGCAGCAGAGATTCGTGACTCAATGAGACATGGTCAAAGGTTGTGGTTGGGAACATTCAGCACTGCAGAGGAAGCAGCTAGAGCCTATGACAGAGCTGCATATGCCATGAGGGGACCCTTTGCAGTCCTCAATTTCCCCAGTGAATACCCCCCTTTAGCAGTTGCTTCTTCTTCTTCTTCTTCCTCCAATGCTTCTGCACCCTCTTCAAGTCACCCACCACATGTTGAAGGAAGTGAGCCACCAAATCAAGTGATTGAGCTTGAGTACTTTGATGACAATTTGTTGGAGGAACTTCTTGGGAAAGGCATGGAAGTGACAGAAAAAGAGGCGGAGAAGAGAAGGAAAGAAGTGCGGTACCGGGGAGTCAGACGGCGGCGGTGGGGCAGATACACGGCAGAGATCAGAGACCCTTCAAAAAAGCAAGGGTCACGGTTATGGCTGGGGACCTTTGACACCGCTGAAGAGGCTGCTAGAGCTTATGATCATGCAGCCTTCACTATGAGAGGTCGTGCTGCTATTCTGAATTTTCCCAATCATCATCATTTTAGGGGCCATCCTACTCACTTACCTCATTCTTCTTCTTTTTCCACCACTCGCTCACTCCATACCCAAGTTGTTGAGTTTGAGTATTTGGATGATAAGGTCTTGGAGGACCTTCTTGACTTTGAACTCAAAAAGGCTACCAATCAA 793 0.4691 MDKGGKGKDEENHVKYRGVRRRPWGKFAAEIRDSMRHGQRLWLGTFSTAEEAARAYDRAAYAMRGPFAVLNFPSEYPPLAVASSSSSSSNASAPSSSHPPHVEGSEPPNQVIELEYFDDNLLEELLGKGMEVTEKEAEKRRKEVRYRGVRRRRWGRYTAEIRDPSKKQGSRLWLGTFDTAEEAARAYDHAAFTMRGRAAILNFPNHHHFRGHPTHLPHSSSFSTTRSLHTQVVEFEYLDDKVLEDLLDFELKKATNQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02562 257 MobiDBLite consensus disorder prediction 80 103 - -
Pste4g02562 257 PANTHER DNA-BINDING DOMAIN 11 96 IPR044808 GO:0003700|GO:0009873
Pste4g02562 257 FunFam Ethylene-responsive transcription factor 2 144 205 - -
Pste4g02562 257 ProSiteProfiles AP2/ERF domain profile. 145 204 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 SMART rav1_2 145 210 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 Pfam AP2 domain 145 196 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 CDD AP2 159 206 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Pste4g02562 257 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Pste4g02562 257 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700|GO:0006355
Pste4g02562 257 MobiDBLite consensus disorder prediction 80 107 - -
Pste4g02562 257 SUPERFAMILY DNA-binding domain 145 205 IPR016177 GO:0003677
Pste4g02562 257 CDD AP2 15 73 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Pste4g02562 257 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02562 Pste-Chr4 18064347 18071729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02562 142 253 AP2-EREBP Transcription Factor Family AT3G23230 55.645 4.91e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pste4g02562 AP2 9.3e-15 CL0081