Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02555 AAAATGTCCATAAACCACTACTCCATGGACCTTACCGAAAGCACACTCTGGTGGCCTCAACAACAACCTATCTTAACGGAAACAACACAAAACCCCTCAACTTGGCCACCCCCTGACCCGCTTCGTCTCAATCTGAAACCCCAAAACGACGACGATGAGGACAACGACAACGACAACGACAACGACAACGACAACGACAACGAAAACGAAGACGACCAAACCCAAACCACAACCACAACTAAACAAACCGACGACGAAAAGGAACCCATGTTCGAGAAGCCTCTAACCCCCAGCGACGTCGGGAAGCTCAACCGTCTCGTAATCCCCAAGCAGCACGCCGAGAAGTATTTTCCCCTCAGCGGCGGTGCCACCGCTGACTCCGCCGAGTGCAAGGGCCTGTTACTCAGTTTCGAGGACGAGTCCGGCAAGTGCTGGCGCTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGCTGGAGCCGCTACGTCAAGGACAAGCGTCTCGACGCCGGCGACGTCGTTTTGTTCGAGCGCCACCGCGCCGACGCCCACCGCCTCTTCATCGGATGGAGGCGCAGGCGACAGAACGACGCCCTCCCCGCGCACGTTAGCAGGGCCGTGGGGCGTGGTGCTGATGGAAACAACACCACTGGCAAGAACGACGGTCCTTCTGCTGTGGGCGTGGGCTGGACCAGAGCCTTCTATTCTGCGCATCCTTATCCTACGCATCATCATCAGCCATACCACAATGACTGTCTTCATGCAGTGCGTGAAGTTTACCTTCCAATTAATTGGGAGAAATGTGGTTTTATATTGGGATTTGTGAGGAGAGGAGTGGTAGAGGGTCCCAAGGTCAGAACCAAAGGACGAAAAACAGTTCGAGTTCAAGGGTACTTAGGCTGTTTGGGGTCAACATGGAATGCCAAGCAGAACATGATTCTGGACCCTCCTCACCCCAATGCTCCTATAATAGTAGCAACATGCCATCCACACAGGGCACAGATTCCCATCACCATTTCTACCATCATCACCAACCTAATTCTTCTTCCAACCCCCCTCATCACATGGTACGTCACCAACCATACTACTACTAGAAAACAGTATGCCACCCCCCTCTTTTCTATCCTCATCTTTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTGCTCAAGTGTAA 1197 0.5238 KMSINHYSMDLTESTLWWPQQQPILTETTQNPSTWPPPDPLRLNLKPQNDDDEDNDNDNDNDNDNDNENEDDQTQTTTTTKQTDDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGATADSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAHRLFIGWRRRRQNDALPAHVSRAVGRGADGNNTTGKNDGPSAVGVGWTRAFYSAHPYPTHHHQPYHNDCLHAVREVYLPINWEKCGFILGFVRRGVVEGPKVRTKGRKTVRVQGYLGCLGSTWNAKQNMILDPPHPNAPIIVATCHPHRAQIPITISTIITNLILLPTPLITWYVTNHTTTRKQYATPLFSILIFFLFSLFSFLFSLAQV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02555 398 ProSiteProfiles B3 DNA-binding domain profile. 91 199 IPR003340 GO:0003677
Pste4g02555 398 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 245 IPR044800 GO:0003700
Pste4g02555 398 MobiDBLite consensus disorder prediction 51 71 - -
Pste4g02555 398 MobiDBLite consensus disorder prediction 22 103 - -
Pste4g02555 398 Pfam B3 DNA binding domain 91 198 IPR003340 GO:0003677
Pste4g02555 398 SUPERFAMILY DNA-binding pseudobarrel domain 86 200 IPR015300 -
Pste4g02555 398 SMART B3_2 91 199 IPR003340 GO:0003677
Pste4g02555 398 CDD B3_DNA 89 189 IPR003340 GO:0003677
Pste4g02555 398 Gene3D - 79 207 IPR015300 -
Pste4g02555 398 FunFam B3 domain-containing protein 84 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02555 Pste-Chr4 17986499 17988512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02555 86 198 RAV Transcription Factor Family AT3G11580 78.992 2.31e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste4g02555 B3 6.5e-29 CL0405