Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02548 TATGAGTTGAGTTTCTGTAACTTCTCCGTCCTGCGGATCCAACTCCACCACCATTTCCGGCGTCTACATAACTGTGCTTCGCCAGCATAGCTTTGCGGAAACCCAATCCTATCCAGAAAATTTTCCTTCCGAGCCGACGGAGGTCCGGGAATCGCTAATTGCATTCGAAGCTCTTTGATCATTGACAGGCTACCAATACAACCATTGCTCAGATGTCAATTAACAAGGACATTATTAATTTGAAGGATCCTCATGCTGAAGAGTTGCCTCAGTACATACATATAAACCAGAATGAGTTTTACATTCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATTCTGATGACCCTGATAGTGCATGTGGGGATAGCTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGCCCTTGTGATATCTTATGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCGAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGCCTTCTGGCTGATGAGGATATTAAGGCAGGCCAATTTGTCATTGAATACTGTGGAGAAGTTATATCTTGGAAGGAAGCCAAACGTAGATCACATGCTTATGAAAATCAAGGTCTTAAAGATGCGTTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAACTGTGAGACGAGAAAGTGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTCTGCGGTGCAATCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGGTACTGTGTTGAGAAAATTCCTGTATATGATTCTTCAGAGGATGAACCAATGTCAAATGTTAATGGACGTACTGAACCCTCTTTGGATGTTATGGTTAAAGCTGAGCAATTATCAGAGTCCGCTTCTTTCCATGTTCAGCCCATTGATTCATTTCAGATGAAAGGTTTAGATGTCAAGCAGATTAAAACTGATGTGGCTGAGGAGGATATGAACTTATATTGCCAAGATACTGAACAAACCCTATCACAAAAGAATGCAATGATATCTGGAAACCGAAGTAATGCTGCAGGCAGAAACTATCGCCTTGGACCTAGATCCATGTCTACCAAAAGATCAAGGGCATATAATGGTGGAAGATTTAAAAATCTCATAGAAAAGAAAATTGATGCAAAGTTTGCAGCTGGCCTCTTAGCATCCAAGGAAGCACAGGAGGAGATTTTAAATTGTGAGAAAATAAAGGATGATGCTACATCCGCTCTTGATTCCTTATACGATGAAATACGACCTGCCATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACGACTGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTGAAATTGAAGGCAGAGTTTGACCTTTACTCCTCAATTGTCAAAAATGTTGCTTGCACTGCGCCTAGGGCACTTGGCCAAGTAAAATCTACTGAAGTAGATAACGAAAACGAAATTAAGCTCCTGACAGGTTGAAATTCTTATTACATTCTTTTCCCATGTATAATCTGTAATTTACAGTGTCACAAAATATATGGGCAACTTTGAGGAAACTACTTTTTAAAAATTCATAAAATAGGGAATTTACCACTCGA 1807 0.3996 MSINKDIINLKDPHAEELPQYIHINQNEFYIRRHKKQKEEDIAICECKYDSDDPDSACGDSCLNVLTSTECTPGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSHAYENQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGAIKCSGFLGAKSRGFQEDTYLWEDDDDRYCVEKIPVYDSSEDEPMSNVNGRTEPSLDVMVKAEQLSESASFHVQPIDSFQMKGLDVKQIKTDVAEEDMNLYCQDTEQTLSQKNAMISGNRSNAAGRNYRLGPRSMSTKRSRAYNGGRFKNLIEKKIDAKFAAGLLASKEAQEEILNCEKIKDDATSALDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAPRALGQVKSTEVDNENEIKLLTG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02548 491 SUPERFAMILY SET domain 18 230 IPR046341 -
Pste4g02548 491 Gene3D SET domain 3 245 IPR046341 -
Pste4g02548 491 SMART set_7 93 216 IPR001214 GO:0005515
Pste4g02548 491 FunFam Histone-lysine N-methyltransferase 7 245 - -
Pste4g02548 491 ProSiteProfiles Post-SET domain profile. 217 233 IPR003616 -
Pste4g02548 491 Pfam SET domain 104 210 IPR001214 GO:0005515
Pste4g02548 491 ProSiteProfiles SET domain profile. 93 210 IPR001214 GO:0005515
Pste4g02548 491 ProSiteProfiles AWS domain profile. 40 91 IPR006560 GO:0005634|GO:0042054
Pste4g02548 491 PANTHER SET DOMAIN PROTEINS 11 448 - -
Pste4g02548 491 Pfam AWS domain 52 90 IPR006560 GO:0005634|GO:0042054
Pste4g02548 491 SMART PostSET_3 217 233 IPR003616 -
Pste4g02548 491 SMART shorttest3 40 92 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02548 Pste-Chr4 17955504 17961703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02548 75 232 C2H2 Transcription Factor Family AT2G23740 34.831 3.00e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pste4g02548 SET 1.6e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02548 4 17955504 17961703 Pste4g02548 4 17955504 17961703 ECH