Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02547 ATGGCTGAAGAAGAAGATTCCATAACGTCACCACTGCCGGGAACCTTAGACAAGTTCGTCTCCGGCAAAGTGTTCTCTCCGCAGCCTCTCATGGTGATTCGCGCCGCCACCAGCTTCTGCGGAGCGCGCGTTCAGGCGCCGCCGCCGACGCAAAATCCGCTACCACCGCATGAAGAAGAAGGAGAAGACGAAACGGGCTTCGACTCACTGCGAGAACAGCGGCACAAGATTTCCTTCGAGGCGTTTCTCAAGGCGACGAACGCCAAGGTCGCCACAAAAGAGGAGGCTCTGAAATCGATGGCGCCGGTGCCGGAGGAGGAAGAGGAAGGTGAGGAAGTGCAGTCGCCGCCGGTTGCACCGGTGCAGAAGAAAAAAGCGATTGCTGGTGACGTGGAGAAGAGGAGCATTCAGAATCTCGAGGACGGTGAGTTTCCCGAAGAGGCTGGGTGGTTCTTGCTCGGAAGGAAGATTGAGGTTGCGGTTTCGACGGCCAGAGGAGTGAACAGAATCGTCGATAATGAAATCGTTCATTTCAATTTTCCTCGTCCGAGTTACTCGAGTAAATTTCAGTGGATCGTTCGTGCTTCAACCAAACGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGATTGTGATTCCGGTTATGCAATCTGGGAGGGTTAAGGTTTGGGGCCGGTGTGTTGCTGCGCCAGATAAACTGCAAATGATGCAAGAGATCATGTTTTTAGTGAGCTTTTATGTTCATCACTCTGTATTTGCTGAGCGTGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATAGTGTTTACCCACTTCTTGCCCTATTGAAAATGCTAGAGATCATGCCAAGCCAAAAGGCTGAATTCACCCCTGAGGATATAGATTCTCGGAAGCGGTTGCTCTATCCAAGGGCTGAGCCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAGGGTGCTGAGCCCCTTCCAGAGCAAAATAACGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAAATTGTTGGAGCTGCAGAAATCTATGGCCTAAAGGAAATGGAAGCCCCAAAGGAACTTACGTGTAAGCTAAAGTCTTACCAGAAGCAAGCTCTTTATTGGATGACCGAAATTGAGAAAGGAATGGATTCTGAGAGTGCAGAGAGAAATCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGAACAATTTATGTGAACATATTTACTGGAGAGGCTTCAAAGAAATTCCCGCAAGCAACTCAAATGGCAAGAGGGGGAATTCTGGCGGATGCAATGGGACTGGGAAAGACTGTTATGACAATTGCTCTGATACTCAGTAACCCAGGCAGGGGCAACTCAGAAAGCATGGATGTAGAGAATGGAGATGATAATGTTATCACTAGTAAAAGGAAAAATGTTAACACCTCGAATAAATTTGAGGGTGGCACTCTTATTGTCTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTCGAAACACATTCAGAGCCAGATAGTATATCCATCTTTGTTCATTATGGAGGTGGAAGAACCACTGATCCCTGGTTAATCATAGGGCATGATGTTGTCTTAACAACATATGGTGTCCTACAAGCTGCATACAAAAATGATGGAGAGAATAGCATCTACCACAAGGTCCGGTGGTACAGGGTGGTGCTAGACGAAGCTCATAATATAAAAGCCCATAGGAATCAGACTGCCCAGGCTGCTTTTGCCCTATCCTCACACAATCGCTGGTGTCTAACTGGAACCCCGCTTCAGAATAGCTTGGAAGACCTATACAGTCTCTTGTGTTTCTTGCGAGTTGAACCTTGGTGCAACTGGGCATGGTGGCAGAAGTTGATTCAAAGACCTTACGAGAATGGTGATCCAAGATCTCTTAAGTTGGTCAAGGCCATTTTGAGGATGCTGATGTTAAGAAGAACAAAGGAATCAAAGGATAAGGCAGGAAGGCCTATACTATTCCTGCCTCCAATTGACATTCAATTGATTGAGTGTCAACAGTCAGAATCTGAACGGGACTTCTATGAAGCCCTTTTCGAGAGATCTAAAGTTCAATTTGATCAGTATGTAGCACAAGGAAAGGTTCTTCACCATTATGCAAATATCCTTGACCTACTACTACAGTTGAGACGGTGTTGTAACCATCCGTTTTTGGTTATGTGTGGAAGCGATACCCAGAAATATGCAGACTTAAGCAGACTCGCAAGAAGATTCCTTCAGTCTAATACTGAATGCCCTGATGAAAACAATCAAAATAATCCAAAGCAGCAAGCAGAGTTGAACAAACTCGCAAGCAGATTACTTCATAAATCTGCTTCTTCATCTCACTCTATCCAACCTAGTGCATACATTGCCGAGGTTTTGGAGAAAATTCAAAAGGGTGGCACCGAAGAATGCTCTATATGCATGGAATCTCCAGAAGATCCTGTGTTTACAACATGTGCACATAAATTTTGTAGAGAATGTTTATTCACTTGCTGGGGCACCTCGGCGGGGGGCAAATGTCCAATCTGTCGTCAATTGCTCCAGAAAGATGATTTGATTTCTTGTCCATCTGAAAGCCCATTGAAGGTTGATATTAAGAGCAATATGACAGAGTCTTCAAAGGTTTCAAAGCTATTTGAATTCCTGCAAAGTATTGTGAACTCACCCTCAGGTGAAAAGAGTATTGTCTTCAGTCAATGGACTTCATTTTTTGATATGTTGGAGTGTCCACTGAGGAGGAGAGGGATTGGTTTTTTGAGATATGATGGGAAATTGACTCAGAAGCAGAGGGAGAAAGTTCTGGATGAATTCAATGTAACAAGAGAGAAAAGGGTAACTGAAGTATTGTTGATGTCACTTAAAGCTGGTGGTGTTGGCTTGAACTTAACTGCTGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCTGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGAAGAGTTGTGGTCAGAAGATTCATTGTAAAGGACACAGTGGAGGATCGATTGCAGCAAGTGCAAGCTAGGAAACAAAGGATGATATCAGGTACTCTCACCGACGATGAGGTTCGGTGTGCTAGGATTCAAGACCTTAAAATGCTCTTTACATGAAATAATTTATTTTGAAGCTAAGGATTTCTTGTCTATTCTTTTAGATCTGCTATAAAGCCAATTTTGTATAGGTTGTTGGATCCTTTCTACAGTTAAAGGCTTCTTTTCTTTTTG 3291 0.4455 MAEEEDSITSPLPGTLDKFVSGKVFSPQPLMVIRAATSFCGARVQAPPPTQNPLPPHEEEGEDETGFDSLREQRHKISFEAFLKATNAKVATKEEALKSMAPVPEEEEEGEEVQSPPVAPVQKKKAIAGDVEKRSIQNLEDGEFPEEAGWFLLGRKIEVAVSTARGVNRIVDNEIVHFNFPRPSYSSKFQWIVRASTKRSGEVGRMPMEWAKIVIPVMQSGRVKVWGRCVAAPDKLQMMQEIMFLVSFYVHHSVFAERVDTSWRLEACGKIDDSVYPLLALLKMLEIMPSQKAEFTPEDIDSRKRLLYPRAEPDEAAALPLIKRRKGAEPLPEQNNDEQALSESALNKIVGAAEIYGLKEMEAPKELTCKLKSYQKQALYWMTEIEKGMDSESAERNLHPCWSAYTICKGRTIYVNIFTGEASKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGRGNSESMDVENGDDNVITSKRKNVNTSNKFEGGTLIVCPMALLGQWKDELETHSEPDSISIFVHYGGGRTTDPWLIIGHDVVLTTYGVLQAAYKNDGENSIYHKVRWYRVVLDEAHNIKAHRNQTAQAAFALSSHNRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYENGDPRSLKLVKAILRMLMLRRTKESKDKAGRPILFLPPIDIQLIECQQSESERDFYEALFERSKVQFDQYVAQGKVLHHYANILDLLLQLRRCCNHPFLVMCGSDTQKYADLSRLARRFLQSNTECPDENNQNNPKQQAELNKLASRLLHKSASSSHSIQPSAYIAEVLEKIQKGGTEECSICMESPEDPVFTTCAHKFCRECLFTCWGTSAGGKCPICRQLLQKDDLISCPSESPLKVDIKSNMTESSKVSKLFEFLQSIVNSPSGEKSIVFSQWTSFFDMLECPLRRRGIGFLRYDGKLTQKQREKVLDEFNVTREKRVTEVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVVVRRFIVKDTVEDRLQQVQARKQRMISGTLTDDEVRCARIQDLKMLFT 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02547 1058 ProSitePatterns Zinc finger RING-type signature. 833 842 IPR017907 -
Pste4g02547 1058 SMART helicmild6 919 1005 IPR001650 -
Pste4g02547 1058 Gene3D - 864 1057 IPR027417 -
Pste4g02547 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 427 621 IPR014001 -
Pste4g02547 1058 SMART ring_2 818 857 IPR001841 -
Pste4g02547 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 1046 IPR027417 -
Pste4g02547 1058 MobiDBLite consensus disorder prediction 43 67 - -
Pste4g02547 1058 Pfam HIRAN domain 165 243 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pste4g02547 1058 Pfam Helicase conserved C-terminal domain 894 1005 IPR001650 -
Pste4g02547 1058 SUPERFAMILY RING/U-box 801 863 - -
Pste4g02547 1058 ProSiteProfiles Zinc finger RING-type profile. 818 858 IPR001841 -
Pste4g02547 1058 MobiDBLite consensus disorder prediction 96 126 - -
Pste4g02547 1058 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 179 1058 - -
Pste4g02547 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 659 IPR027417 -
Pste4g02547 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 863 IPR013083 -
Pste4g02547 1058 CDD SF2_C_SNF 883 1006 - -
Pste4g02547 1058 Pfam Zinc finger, C3HC4 type (RING finger) 818 857 IPR018957 GO:0046872
Pste4g02547 1058 FunFam DNA repair protein RAD5B 424 660 - -
Pste4g02547 1058 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 888 1054 IPR001650 -
Pste4g02547 1058 CDD DEXDc_SHPRH-like 371 659 - -
Pste4g02547 1058 Gene3D - 673 795 IPR027417 -
Pste4g02547 1058 Gene3D - 421 660 IPR038718 -
Pste4g02547 1058 SMART ultradead3 367 638 IPR014001 -
Pste4g02547 1058 Pfam SNF2-related domain 374 737 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02547 Pste-Chr4 17946740 17952889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02547 139 1057 RAD5 or RAD16-like Gene Family AT5G43530 62.433 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste4g02547 SNF2_N 6e-81 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02547 4 17946740 17952889 Pste4g02547 4 17946740 17952889 ECH