Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02521 ATCCTCAAACGGCCAGCACCCACAGCATCGGCGGCGGCGGCGACGATCACTCTCCAACAGGCTAAAATGTCTCTGGTGGCGAATGAGGATTTCCAGCACATTCTACGTGTGCTGAACACTAACGTCGATGGCAAGCAGAAGATAATGTTCGCTCTCACATCCATCAAGGGTATTGGGAGGAGATTCGCCAACATGGCTTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCTGAGTTGGATAATCTGATGACTGTGGTTGCCAACCCAAGGCAATTCAAGATCCCAGACTGGTTTTTGAACAGGAAGAAGGATTACAAGGACGGCAAATACTCACAGGTCGTGTCTAATGCTCTTGACATGAAGCTCAGGGATGACTTGGAGAGACTCAAGAAAATCAGAAACCACCGAGGTTTGAGGCACTACTGGGGCCTTCGTGTCCGTGGTCAGCACACCAAGACTACTGGCCGCAGGGGGAAGACTGTTGGTGTCTCCAAGAAGCGTTAA 525 0.5086 ILKRPAPTASAAAATITLQQAKMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANMACKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02521 174 ProSiteProfiles Ribosomal protein S13 family profile. 37 167 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02521 174 Pfam Ribosomal protein S13/S18 36 164 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02521 174 SUPERFAMILY S13-like H2TH domain 35 174 IPR010979 GO:0003676
Pste4g02521 174 Hamap 30S ribosomal protein S13 [rpsM]. 34 174 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02521 174 FunFam 40S ribosomal protein S18 114 165 - -
Pste4g02521 174 ProSitePatterns Ribosomal protein S13 signature. 143 156 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02521 174 FunFam 40S ribosomal protein S18 23 102 - -
Pste4g02521 174 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 19 174 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste4g02521 174 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 22 174 - -
Pste4g02521 174 Gene3D 30s ribosomal protein s13, domain 2 114 164 IPR027437 -
Pste4g02521 174 Gene3D - 23 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02521 Pste-Chr4 17781585 17783167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02521 23 174 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.395 4.93e-109 306