Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02459 TCCAAATGGAAAACATTGTTCCCTATAGTGTTACCACTTTGTTATTCTCCTTGCTGTTCTTCTGCCTAACCCTGACAAAGATAGGAGTCACTTGTCTCTCCCCTGATGGACAAGCCCTTCTTTCTCTTCTATCTGCAGCAGGTCCTGCTGCAAAATCATCATCTTCTGTTCTTTCCTCATGGAGCCCATCAAGCTCAACACCTTGTTCATGGAAAGGCATCACTTGCTCCCCACAAGGTAGAGTCATTTCCCTTTCTATTCCAGACACTTTTCTCAACCTCTCCTCTTTACCTCCTCAGCTCTCCTCTTTATCAATGCTGCAACTTCTCAATCTCTCTTCCACCAATGTCTCTGGCTCTATCCCACCCTCTTTTGGTCAACTCTCCCATCTTCAACTGCTTGACCTCTCTTCAAACTCTCTCACTGGTTCCATACCTGCTGAACTTGGAAGGCTCTCCTCACTTCAATTCCTTTTCTTGAACTCCAACAGATTGACAGGAAGCATTCCTCAACATCTTTCCAATCTCACTTCACTTGAAGTTCTCTGCCTCCAAGACAATCTTCTCAACGGTTCAATCCCATCACAGTTAGGCTCCTTGACATCTCTGCAGCAGTTTCGGATAGGGGGCAATCCATATCTCAATGGACAAATCCCTTCACAGTTAGGCCTACTCACCAACCTCACCACTTTTGGTGCAGCTGCCACTGGACTTTCTGGTGCCATTCCTTCTACATTTGGTAACTTGATCAGTCTTCAAACACTATCACTTTATGATACTGAAATTTCTGGTTCAATACCACCAGAACTTGGGTTGTGTTCTGAGTTGAGAAATCTGTACCTACACATGAATAAGCTAACTGGCTTTATCCCTCCTCAATTGAGCAAGTTGCAAAAGCTTACTAGCTTGCTACTTTGGGGGAATGCCTTAACAGGTCCAATCCCAGCAGAGCTTTCCAACTGTTCGTCACTTGTTATATTTGATGTCTCTTCTAATGATCTCTCTGGTGTAATACCTGGAGACTTTGGGAAGCTGGTGGTTCTGGAACAGCTGCATCTATCAGACAATTCACTCACAGGTAAAATACCATGGCAGTTGGGCAACTGTACCAGCCTTTCCACTGTCCAGCTTGACAAAAATCAGCTATCAGGTACCATTCCGTGGGAGTTAGGAAAATTGAAGGTTTTACAGAGTTTTTTCTTGTGGGGTAATTTGGTGTCTGGGACCATAGCGTCCTCTTTTGGAAACTGCACAGAACTATATGCGCTTGACCTTTCAAGGAATAAGCTGACAGGTTCTATACCAGAAGAGATTTTTAGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGAAATTCATTAACAGGAAGGTTGCCAACAAGTGTTGCTAATTGCGAGTCTTTAGTGAGACTGAGGGTTGGAGAGAACCAACTTTCAGGACAGATTCCTAAAGAGATAGGTCACTTGCAGAATCTGGTGTTCCTTGACTTGTACATGAATCATTTCTCTGGAAGCATACCAGTGGAAATTGCCAATATCACAGTTCTTGAGCTGTTAGATGTGCACAACAACTACCTCACTGGGGAAATTCCATCTGTGATTGGGGAGCTTGAAAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGACAGGTGAAATTCCTTGGAGCTTTGGAAACTTAAGCTATTTGAACAAGCTCATCCTCAATAATAACTTGCTAACAGGATCAATTCCAAAATCCATTAGAAATTTGCAGAAACTAACTCTACTGGATTTGAGTTACAACAGTCTCTCCGGTGGCATACTCCTGAGATTGGTCATCTTAACCATCAGTTTGGACTTGAGCTCCAACGCTTTTACAGGAGAAATCCCAGACTCAGTGTCTGCTTTGACGCAGTTACAATCACTTGATCTTTCTCATAATATGCTTTATGGAGGAATCAAGGTTCTGGGTTCTCTCACTAGCCTCACTTCTCTCAATATTTCCTACAACAACTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACTCTATCTTCTAATTCATATCTTCAGAACCCCCAGCTTTGTCAGTCCGTGGATGGGACTACATGTTCTTCAAGCCTGATACGAAGAACTGGTTTGAAATCTGCAAAATCTGTAGCTTTAATCACAGTCATTCTAGCCTCGGTTACTATAATTCTCTTTTCATCCTGGATTCTAGTAACTCGTAATCATGGATACAAGGTTGAAAAAACATTGGGAGCATCAACTTCCACACCAGGAGTTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTTAGCGTTGATAATATCTTGGATTGCTTGAAGGATGAGAATGTGATTGGAAAGGGTTGCTCGGGTGTTGTGTACAAAGCTGAGATGCCAAATGGGGAGTTGATAGCAGTAAAGAAGCTCTGGAAAGCAAGCAAAGCAGATGAAGTCGTGGATTCTTTTGCTGCAGAGATTCAGATTCTTGGATACATTCGACATAGGAACATTGTAAGGCTCATAGGTTATTGTTCTAACAGGAGTATCAATCTTCTTCTCTATAACTACATCCCAAATGGTAATCTGCGACAACTTTTACAAGGGAACAGGAACTTAGATTGGGAAACAAGATACAAGATTGCTGTTGGATCAGCTCAAGGTCTAGCTTATCTTCATCATGATTGTGTCCCTGCAATTCTCCATAGAGATGTGAAATGCAATAACATACTCCTAGACTCCAAATTTGAGGCATATCTGGCAGATTTTGGTCTTGCAAAGCTAATGCATTCACCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTACGAATATGGCTACTCCATGAATATAACAGAAAAGAGTGATGTGTATAGTTATGGGGTGGTTTTGCTAGAGATACTAAGCGGGCGTAGTGCTGTGGAATCCCATGTTGGAGATGGCCAACACATAGTGGAGTGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCTGTATCAATACTAGACACAAAGCTCCAAGGCCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGCATTGCTATGTTTTGTGTCAACTCTTCCCCTTCAGAGCGTCCAACAATGAAGGAGGTGGTTGCACTACTAATGGAGGTGAAGAGCCAGCCTGAGGAGGTGGGCAAGACTTCTCAACCTCTAATTAAACAGTCTTCAAATCAAAGC 3227 0.4267 MENIVPYSVTTLLFSLLFFCLTLTKIGVTCLSPDGQALLSLLSAAGPAAKSSSSVLSSWSPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMLQLLNLSSTNVSGSIPPSFGQLSHLQLLDLSSNSLTGSIPAELGRLSSLQFLFLNSNRLTGSIPQHLSNLTSLEVLCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLNGQIPSQLGLLTNLTTFGAAATGLSGAIPSTFGNLISLQTLSLYDTEISGSIPPELGLCSELRNLYLHMNKLTGFIPPQLSKLQKLTSLLLWGNALTGPIPAELSNCSSLVIFDVSSNDLSGVIPGDFGKLVVLEQLHLSDNSLTGKIPWQLGNCTSLSTVQLDKNQLSGTIPWELGKLKVLQSFFLWGNLVSGTIASSFGNCTELYALDLSRNKLTGSIPEEIFSLKKLSKLLLLGNSLTGRLPTSVANCESLVRLRVGENQLSGQIPKEIGHLQNLVFLDLYMNHFSGSIPVEIANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSRNSLTGEIPWSFGNLSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNSLSGGILLRLVILTISLDLSSNAFTGEIPDSVSALTQLQSLDLSHNMLYGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYLQNPQLCQSVDGTTCSSSLIRRTGLKSAKSVALITVILASVTIILFSSWILVTRNHGYKVEKTLGASTSTPGVEDFSYPWTFIPFQKVNFSVDNILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKASKADEVVDSFAAEIQILGYIRHRNIVRLIGYCSNRSINLLLYNYIPNGNLRQLLQGNRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMHSPNYHHAMSRVAGSYEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEVGKTSQPLIKQSSNQS 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02459 1074 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Pste4g02459 1074 SUPERFAMILY Protein kinase-like (PK-like) 769 1049 IPR011009 -
Pste4g02459 1074 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 210 433 - -
Pste4g02459 1074 Gene3D Transferase(Phosphotransferase) domain 1 860 1070 - -
Pste4g02459 1074 ProSiteProfiles Protein kinase domain profile. 782 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g02459 1074 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 860 1067 - -
Pste4g02459 1074 FunFam Piriformospora indica-insensitive protein 2 509 602 - -
Pste4g02459 1074 Gene3D Phosphorylase Kinase; domain 1 768 859 - -
Pste4g02459 1074 SUPERFAMILY L domain-like 380 694 - -
Pste4g02459 1074 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 31 209 - -
Pste4g02459 1074 Pfam Leucine rich repeat 297 356 IPR001611 GO:0005515
Pste4g02459 1074 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Pste4g02459 1074 Pfam Leucine rich repeat 394 452 IPR001611 GO:0005515
Pste4g02459 1074 PRINTS Leucine-rich repeat signature 129 142 - -
Pste4g02459 1074 PRINTS Leucine-rich repeat signature 629 642 - -
Pste4g02459 1074 SMART serkin_6 782 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g02459 1074 MobiDBLite consensus disorder prediction 1055 1074 - -
Pste4g02459 1074 SUPERFAMILY L domain-like 56 405 - -
Pste4g02459 1074 FunFam Putative LRR receptor-like serine/threonine-protein kinase 610 694 - -
Pste4g02459 1074 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
Pste4g02459 1074 MobiDBLite consensus disorder prediction 1057 1074 - -
Pste4g02459 1074 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Pste4g02459 1074 Pfam Protein kinase domain 784 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g02459 1074 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 758 859 - -
Pste4g02459 1074 Gene3D Ribonuclease Inhibitor 28 91 IPR032675 -
Pste4g02459 1074 Gene3D Ribonuclease Inhibitor 435 703 IPR032675 -
Pste4g02459 1074 Gene3D Ribonuclease Inhibitor 336 434 IPR032675 -
Pste4g02459 1074 SMART LRR_sd22_2 535 564 - -
Pste4g02459 1074 SMART LRR_sd22_2 126 147 - -
Pste4g02459 1074 SMART LRR_sd22_2 150 176 - -
Pste4g02459 1074 SMART LRR_sd22_2 583 598 - -
Pste4g02459 1074 SMART LRR_sd22_2 629 654 - -
Pste4g02459 1074 Gene3D Ribonuclease Inhibitor 232 335 IPR032675 -
Pste4g02459 1074 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 308 1049 - -
Pste4g02459 1074 SMART LRR_typ_2 126 150 IPR003591 -
Pste4g02459 1074 SMART LRR_typ_2 415 439 IPR003591 -
Pste4g02459 1074 SMART LRR_typ_2 247 271 IPR003591 -
Pste4g02459 1074 SMART LRR_typ_2 174 198 IPR003591 -
Pste4g02459 1074 SMART LRR_typ_2 535 558 IPR003591 -
Pste4g02459 1074 SMART LRR_typ_2 343 367 IPR003591 -
Pste4g02459 1074 SMART LRR_typ_2 295 319 IPR003591 -
Pste4g02459 1074 SMART LRR_typ_2 629 656 IPR003591 -
Pste4g02459 1074 Gene3D Ribonuclease Inhibitor 92 231 IPR032675 -
Pste4g02459 1074 Pfam Leucine Rich Repeat 537 559 IPR001611 GO:0005515
Pste4g02459 1074 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 441 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02459 Pste-Chr4 17473830 17477323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02459 28 1053 Receptor kinase-like Gene Family AT5G56040 45.134 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste4g02459 Pkinase 3e-39 CL0016