Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02456 TTGCTATTCCCATTTTCTCGTTCCGTCCACTTTCTTTTTTTATTTGAAAAAAAAAAAAGTGAATGGCGGCAGCAATTTCTTCAGCGATGACTCAGTCTGTGGGTGTGGCGGCGGCGGCGGCGGTGATGGCTCCGGCAGCCGCATTGGGCGCAGGGCCATTTGCGAATGCGTCGCTTTACGTTGGAGATCTCGAAGGCAGCGTGAACGAGGAGCAGCTCTATGATCTGTTCAGCCAAGTGGCTCCTGTTGTCTCTATCAGGGTTTGCAGAGATCAGGCCAGACGATCTTCCCTCGGTTACGCTTATGTCAACTTTTCCAACGCTCACGATGCGTCTACTGCTATGGAACTTTTGAACTTCACTCCTGTGAATGGAAAGCCAATCCGGATTATGTTTTCTCAACGTGATCCTAGCATCCGCAAAAGTGGATCTGGCAATGTGTTCATTAAGAACCTCGATGCAACAATTGATAACAAGGCACTACATGACACTTTTGCTGCCTTTGGTACTGTACTCTCTTGTAAGGTGGCTCTTGACAGTAGTGGCCAGTCAAAAGGGCATGGTTTTGTTCAGTTTGACAATGAAGAGGCTGCTCAGAATGCAATCAACCAGTTGAATGGCATGTTGATAAATGAGAAACAAGTCTACGTTGGACTCTTTATTCGACGTCAGGAAAGGGCTCAGACAAATGGGTCACCCAAATTCACTAACGTGTATGTGAAAAATTTGTCTGAAACGTACACTGATGATGACCTGAAGAAGCTATTTGATCCTTATGGAACAATAACCAGTGCAACTGTTATGAAAGATGTGAATGGGAATTCTAGATGCTTTGGTTTTGTGAATTTTCAGAGTCCCGACTCAGCCGCTGCTGCAGTTGAGAGGTTAAATGGAACTACCATCGATGATGAAAAGGTTTTATATGTGGGGAGAGCTCAGAGAAAAGCAGAAAGAGAGGCTGAGTTGAGAGCCAAAATTGAGCAGGAAAGAATCAGTAGATTTGAAAAATTACAAGGTGCAAATTTGTACTTAAAAAATCTTGATGACAACTTCAGTGATGAGAAGTTGAATGATCTATTTTCTGAGTATGGAACTATAACATCTTGCAAGGTGCTGGTTGATTCACATGGGCGTAGCAAGGGATCTGGTTTTGTTGCTTTTTCTACTCCTGAGGAAGCAAGTAAAGCCTTGAATGAAATGAATGGCAAATTGATTGGACGAAAGCCTCTATATGCTCATTTTGCTCAAATCCGAGCACCTGGTGGACTGGCACCTCTGCCAGCAGGTATTCCAGTATATCATCCAGGGGCGCCAAGACTTGCCCCTCAACATTTGTACTACGGTCAAGGCACACCTGGCTTCATACCACCACAGCCTGCCGGATTTTCTTTCCAACAACAAATCTTGCCTGGAATACGGCCTGGAGTTGCCCCCAATTTCATTATGCCTTACCACCTTCAGAGACAGGGTCAATCCGGGCAGAGAACAGGTGTTCGACGAAATGGAAATCTCCAACCAGTGCAACAGAATCAGATGATACATCGTAACAACCAAGGGTTTAGATACATGCCCAATGGTCGAAATGGGGTGGATCCATCTTATGTTCCTCACAGTCTTATGAGTCCAATGATGCCTATGCCTTTTGATGGTTCTGGAGTTACTGCAGTTCCTAATGACAATCAGCGTAATGGAGCATTGTCAGCCACACTTGCCTCAGCTCTGGCCTCTGCTACTCCAGAAAATCAGCGCATGATGTTGGGTGAACATCTGTATCCTCTTGTGGAGCGTCTCGCACCAAATCAGTACACAGCAAAGGTTACAGGGATGCTGCTTGAAATGGACCAATCAGAGGTTATCAATCTCATTGAATCTCCCGAGGACCTGAAGATAAAGGTGTCAGAGGCGATGCAGGTGCTGCGCGAGGTTGCCTCTGGTTCTGAAGTTGGTGATCAACTGGGGTCGTTGTCATTGAACGAATGAAGTGATCTCAACGACGGGTAGAAATTACGTGAGCTACCTTTTTTGGGCTTAACACTAGCTATAGTAGTTTCTGGGAATTTTGATTTTCATAAATGTCAAGTTTTCTCTTTTGCGGGATTGTTGATTTGAGAGATGAGACGGAGGGATTCAAGTATTTATTTTGGTAGACTTTTTAACAGGTTCATTTTAGTATTTTCCGATTCTTATGATTTTATTTTGTTTAGGATTGAGTTTGACTGTTTGAGGTAGA 2229 0.4432 MAAAISSAMTQSVGVAAAAAVMAPAAALGAGPFANASLYVGDLEGSVNEEQLYDLFSQVAPVVSIRVCRDQARRSSLGYAYVNFSNAHDASTAMELLNFTPVNGKPIRIMFSQRDPSIRKSGSGNVFIKNLDATIDNKALHDTFAAFGTVLSCKVALDSSGQSKGHGFVQFDNEEAAQNAINQLNGMLINEKQVYVGLFIRRQERAQTNGSPKFTNVYVKNLSETYTDDDLKKLFDPYGTITSATVMKDVNGNSRCFGFVNFQSPDSAAAAVERLNGTTIDDEKVLYVGRAQRKAEREAELRAKIEQERISRFEKLQGANLYLKNLDDNFSDEKLNDLFSEYGTITSCKVLVDSHGRSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYAHFAQIRAPGGLAPLPAGIPVYHPGAPRLAPQHLYYGQGTPGFIPPQPAGFSFQQQILPGIRPGVAPNFIMPYHLQRQGQSGQRTGVRRNGNLQPVQQNQMIHRNNQGFRYMPNGRNGVDPSYVPHSLMSPMMPMPFDGSGVTAVPNDNQRNGALSATLASALASATPENQRMMLGEHLYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIESPEDLKIKVSEAMQVLREVASGSEVGDQLGSLSLNE 638
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02456 638 CDD RRM4_I_PABPs 318 395 - -
Pste4g02456 638 FunFam Poly(A) binding protein cytoplasmic 1 like 311 398 - -
Pste4g02456 638 SMART rrm2_1 216 288 IPR003954 GO:0003676
Pste4g02456 638 SMART rrm2_1 37 110 IPR003954 GO:0003676
Pste4g02456 638 SMART rrm2_1 320 392 IPR003954 GO:0003676
Pste4g02456 638 SMART rrm2_1 125 197 IPR003954 GO:0003676
Pste4g02456 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Pste4g02456 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Pste4g02456 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Pste4g02456 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Pste4g02456 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Pste4g02456 638 Coils Coil 288 308 - -
Pste4g02456 638 CDD RRM3_I_PABPs 214 294 - -
Pste4g02456 638 CDD RRM1_I_PABPs 37 116 IPR034364 -
Pste4g02456 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pste4g02456 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 623 IPR002004 GO:0003723
Pste4g02456 638 SMART poly_2 557 621 IPR002004 GO:0003723
Pste4g02456 638 SUPERFAMILY RNA-binding domain, RBD 214 395 IPR035979 GO:0003676
Pste4g02456 638 CDD RRM2_I_PABPs 122 197 IPR045305 -
Pste4g02456 638 FunFam Polyadenylate-binding protein 205 301 - -
Pste4g02456 638 FunFam Polyadenylate-binding protein 541 624 - -
Pste4g02456 638 FunFam Polyadenylate-binding protein 29 124 - -
Pste4g02456 638 FunFam Polyadenylate-binding protein 125 198 - -
Pste4g02456 638 Gene3D - 300 397 IPR012677 -
Pste4g02456 638 PANTHER RNA BINDING PROTEIN 36 98 - -
Pste4g02456 638 Gene3D - 544 622 - -
Pste4g02456 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
Pste4g02456 638 SUPERFAMILY RNA-binding domain, RBD 36 204 IPR035979 GO:0003676
Pste4g02456 638 SUPERFAMILY PABC (PABP) domain 489 623 IPR036053 GO:0003723
Pste4g02456 638 Gene3D - 200 299 IPR012677 -
Pste4g02456 638 Gene3D - 125 198 IPR012677 -
Pste4g02456 638 Pfam Poly-adenylate binding protein, unique domain 553 618 IPR002004 GO:0003723
Pste4g02456 638 Gene3D - 31 124 IPR012677 -
Pste4g02456 638 SMART rrm1_1 320 392 IPR000504 GO:0003723
Pste4g02456 638 SMART rrm1_1 216 289 IPR000504 GO:0003723
Pste4g02456 638 SMART rrm1_1 125 197 IPR000504 GO:0003723
Pste4g02456 638 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pste4g02456 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Pste4g02456 638 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 36 397 IPR006515 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste4g02456 Pste-Chr4 17452755 17457697 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02456 35 631 Eukaryotic Initiation Factors Gene Family AT1G71770 56.300 0.0 663