Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02432 TAACACTTTGATTTGTATTGCATCACCACAACATGGCTGCAACTGCTGCAGGCATAGCTTCTTTGTTTTCTTCTTCCATTAACACTGTCAAATGTGTTCGTTCCAAGAACTGCTCCATGGTTGATTCTCTCATTACAACAGTGCCTTCAAACCACATGTTTGCATCTGTGTCACACTTGGTGGAACCTTTGTCCGTTGGGGGTGTCACTTCACACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTGGCACAAGAAGAGGTTGTGGTTGTGGATGATGAGGTAGGTGATGTTGGTTCAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGTGAAGACGTGGTGGCAGAACAAGACTCTGATGAATCCTCTGCCAGCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCAAAACTTGCAGGACTAATTGAGGATTATGGTAGTGCAGAACTAATTGAGGTTCTATACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATAGAAGATTGCAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTTCTGGGAAGAACCTTGAGGGTGAACTTCTCTAACAAACCAAAACCAAAAGAACCTTTGTACCCGGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAAATAATGAGATCTTGACACAAGCATTTCAAGAATATGGAACAGTTGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAAATCGCGTGGCTATGGCTTCGTTTGCTATTCAACAAAAGCAGAGATGGAAGCTGCCCTTGCAGCCCTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAAGGTCAATAGAAACTTGAGAAGGCTTAGATGTTCAACAATGGCGCCATAGAAGTGAGAAGAGGATGCTAGTATACCTATCATGATGCACATGATTTAATTTTCTGAGGAATTCTTTTTCATTTCCTGTGGTGTATAAATTATTTGCTCCCACTTTAAAAATGCCGACCCCAATGCTGTTATATTTTGAGTTTAACATTTTTGCTAATACTAACATTGGCCTATTTATTGCTTCCTTCTTGACTCACTGAGTCACGCATTGAATCACATAATCTATCGTGTGTAACATTTGCTATGAAATAGTATTCAGCACTAGAAGTTGTAGAGTTTTGTACATAATAAATTGATAAACTTCAAAATAAA 1259 0.4035 MAATAAGIASLFSSSINTVKCVRSKNCSMVDSLITTVPSNHMFASVSHLVEPLSVGGVTSHKLWGPRISAAVAQEEVVVVDDEVGDVGSVEEEKVEENEGEDVVAEQDSDESSASTKLYFGNLPYSVDSAKLAGLIEDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVNNEILTQAFQEYGTVVGARVLYDGETGKSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLAQGKRA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02432 288 Gene3D - 73 196 IPR012677 -
Pste4g02432 288 SMART rrm1_1 117 190 IPR000504 GO:0003723
Pste4g02432 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Pste4g02432 288 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 197 - -
Pste4g02432 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Pste4g02432 288 SUPERFAMILY RNA-binding domain, RBD 203 287 IPR035979 GO:0003676
Pste4g02432 288 MobiDBLite consensus disorder prediction 89 108 - -
Pste4g02432 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 278 IPR000504 GO:0003723
Pste4g02432 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Pste4g02432 288 FunFam 28 kDa ribonucleoprotein, chloroplastic 198 288 - -
Pste4g02432 288 SUPERFAMILY RNA-binding domain, RBD 108 198 IPR035979 GO:0003676
Pste4g02432 288 PANTHER OS02G0815200 PROTEIN 35 287 - -
Pste4g02432 288 Gene3D - 197 288 IPR012677 -
Pste4g02432 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Pste4g02432 288 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02432 Pste-Chr4 17317993 17321174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02432 115 286 Eukaryotic Initiation Factors Gene Family AT3G16380 32.461 1.70e-17 80.5