Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02426 CGCAATTGCATCACGTGAGTGAGCTCACGTTCATACTTACTCACTAAAGGCACCGAATCTCCGTTCAAGGAAGCTTCTCGGCCACTGCTAATAGCTTCCTTCTTTGACCAAAACACTATCCGGAATCCACAGCCACACCCACACCCACACCAAAACCAAAACACCCTCAACTCTCAATTTTCCAAATTCACGCGTTTCTTTTCTTTCTAACACACTCTCTCTGTTAAGCTCTTTCGTTCCGCGCCTCCTTCTTCTAATCCTCTCACCCAGAGGTTCCAATCATAACATGTAATTCTCAGATTTTGGCTTCGCCTCTTCTTCATTCTGTTTTTTTCCCAGCTAGGGCTTTTAATTCGCCGCTTTCCCGGCTCGAATCGCCACATATTTTGGGGGTTTTCGGTTTTTGCTTTACAAAGTTTCCGTTTTTGGTGTTGGGTGATCGAGGGCTGTCTGATTTTTTCTTGTGATCGAGAATGGGTGAGGCTTCCGGAACTGGTTCTGCCGATTCTTTCAGCCAGATGATGTCGTCGATGCCGGGTTTTCGCTTCCATCCTACGGACGAGGAGTTGGTTATGTACTATCTGAAGCGAAAGATTTGTGGGAAGAGGTTGAAGCTCGACGTGATTCGTGAAACCGATGTGTATAAGTGGGATCCGGAGGATTTGCCTGGACAATCAATACTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCACAGAGATAGAAAGTATCCTAATGGTGGAAGGTCTAACCGAGCAACCAGACATGGGTATTGGAAAGCAACGGGAAAGGATCGTAATGTGATATGCAATTCTAGGACAGTTGGAGTAAAAAAGACCCTGGTTTTCTATGTAGGCAGAGCTCCTAGTGGTGAGCGGACTGATTGGGTTATGCATGAATACACCTTGGATGAAGAGGAGCTTATGAGATGCCAGGGTGTTAAGGACTATTACGCTCTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAGCAGTATGGTGCACCATTTAATGAAGAAGAGTGGGCAGATGATGACATAGTAGATTTTAATATCAAAACAACTGATGGGGAGGCTCCAAATGTCCCTGGAAATTTTAATTTATCACCGCCTTTGCTTGATGCTGACATTAACGACATCATTAGAGGAATTTTGGATGAGGAGCTTGTGCTTGACCAGCAGCATGTGAATGGTTATCCTGACTTTCCTCAGGTTGTTACAGAAGAAACACAAAGTACTGTTGTGGATCAGTTCTCCGAGGCTGTGATGTTTCCTCAGGAAATCAGAACCGTACATCCTAGCAGTCAGTTTTTTGATGCACAGCCCAGCTTTGACTTCAATCGGCCAGCTACTTCTCATTTGAATGTTTCTGAAGCATCCGAGGTCTCTTCCGTTTCTGACATTAAAACAAAGGGGCTTGACTTTCAAGAGGATGGCTTCTTGGAAATTAATGATCTCATTGATACTGAACCTAGATTGTCAGATGTGGAAAAGCCGACAGAGTACCAGCAGTTTGAAGATGGATTGAGTGAACTTGATCTGTTCCAAGATGCAGAGATGTTTCTTCATGACTTGGGGCAAATTATTGATGAAACAGATTCACATGCATATGCAAATGCCCTTGTCAGCAACAATATTCAATGTCAAAGTTACCAGTTGCCGTATCCAGAGGATGCCAATCAAACTGTTGGTGAATTCTGGATGCATGGGGAAAGAAACACCCCAAGTTTCTCAGAAGGCTTTGTTGATTCTTTCACACAATCATCCCCAGGTGTTGTATATGAATCTGTCAGCTTTCCTACGGAAGGCAATAACAATCAAAGTAGCACCGTGGAAGATGTTGCTACAAGTAGCTTCTCCTCTGCTCTCTGGGCCTTTGTTGAGTCAATACCTACTACTCCTGCATCGGCTGCTGAAAGTGCTTTGGTGAACCGCGCTTTGAATAGAATGTCTAGCTTCAGCAGGTTGAAGATCAAGCACACAAACATTGCTGCAGCAGGTAAAGACACTGCAACTATGAAGAGAGCAGGCAGAAAGGGACTTCGATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTTGTGTGGGTTTTTGTTGGAAACTTAAGACTATTGGGGAGATGTATTTCTCCTTGAATATATATGTAAATCCAAAGTTTTGCTGCTAGGTATATTTTGCCTGGGACCTCCCAGAATGACTGTTGTCTGGGATCTCCCCAGAATTACCAAACAGTGGTGTTCTAACCTATTCTCAAAATAAAAATAAAAATAAAAAAAACTTTGTGAATATTGAAGACAATATGAAGCGTAGGGTAGGTCAGATGAGCCTTTATTTCAGAGAAGGCGCTGGAAAGGAATTTGCAGGGTGAAATGGTAACTTCATTAACAAAAACGTTTCTGAGTTTTTAAACTTGTCTAATCTTATTTTTTAGTTAGTTTATTTAGTTTGTTTTTTGGAGATTGATTGATTGTACAGGGATAAGATCTCCTTTTGTGGAACGTGTCTGTCTGTAATGGTCTTTTGTAATGCCTCCGTTATCATTAGATTTTTGTTATTGTTTGTTAAATAAAATGTGTCCTGAATGGTCTGCAAAGTAAGGAGCTGAGTTTGAAAAACTGGATGGTTGAACTAAGAATCGGTTCGGTCATCAACATGAACAATTCATGAACCTGGTGAGTCTGGAAAATTGGTCAAGAATAGGCTAAGATTGGTTATTTTGTTTGTTTTAAATCATTCTAGTATTTGTTTGTTTGTTTGATTGTTTTAAATAATTCTCG 2795 0.415 MGEASGTGSADSFSQMMSSMPGFRFHPTDEELVMYYLKRKICGKRLKLDVIRETDVYKWDPEDLPGQSILKTGDRQWFFFCHRDRKYPNGGRSNRATRHGYWKATGKDRNVICNSRTVGVKKTLVFYVGRAPSGERTDWVMHEYTLDEEELMRCQGVKDYYALYKVYKKSGPGPKNGEQYGAPFNEEEWADDDIVDFNIKTTDGEAPNVPGNFNLSPPLLDADINDIIRGILDEELVLDQQHVNGYPDFPQVVTEETQSTVVDQFSEAVMFPQEIRTVHPSSQFFDAQPSFDFNRPATSHLNVSEASEVSSVSDIKTKGLDFQEDGFLEINDLIDTEPRLSDVEKPTEYQQFEDGLSELDLFQDAEMFLHDLGQIIDETDSHAYANALVSNNIQCQSYQLPYPEDANQTVGEFWMHGERNTPSFSEGFVDSFTQSSPGVVYESVSFPTEGNNNQSSTVEDVATSSFSSALWAFVESIPTTPASAAESALVNRALNRMSSFSRLKIKHTNIAAAGKDTATMKRAGRKGLRFLFFPILIALCAFVWVFVGNLRLLGRCISP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02426 559 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 255 - -
Pste4g02426 559 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Pste4g02426 559 FunFam Nac domain-containing protein 86 28 172 - -
Pste4g02426 559 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Pste4g02426 559 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
Pste4g02426 559 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02426 Pste-Chr4 17285327 17289474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02426 19 557 NAC Transcription Factor Family AT1G34190 44.578 4.09e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste4g02426 NAM 4e-37 No_clan