Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02423 CAGCAACACGAACAGGCTATTAAAATGTACAAGTTTGAGATCGGGGCAAGTGGGAATATTAGTCATAAGGATCGGTGTGTCAGAAAAACTATTGTCACTTATGTTTTTATAAAGCAAAATTAAAAACCCTTCCATTAACACAAACACAAACACAAGGGTGCCGTTGTTAGAGAAGAAGATCGAATCGCACCGCCAAGTTTCTGAACAAATTATGGTTATGAGGAGGAAGAAGATGGAGCACCGCTTCACCTTCTTCTTCTGCTGTTGATTTCATGGCCACCTCTCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCAACAGAGGAGCAGCTTATTGAAATATGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGCTATGGATTTTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGGCGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAACAGTTAATATCTGAAAAGAAGCTCAACTCCAAACCAGTCATACTGTTTAATTTCAGTTCAGTTGATTCTTTTTCTTTTCTGGCACAGGGTCGTGGTGGTCCTGGAATGACAACAAATGTTGACCCTCAAAAACAAGTTGGTGGCCCAGCTGTCCATGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACTGCTGCAGCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCGCAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTCGGAATGGTTACTTCCCAAGTGGACTTAGGATTTTATTTAAGGCGTGCTATAGTTCCTACTTCCAAGGCTGTGAATTTGCATATTAGATTACAAATGCCAAATCTTAGGCTGGTTTCAGATCAAATACCACAGTCTTTAATGAATGAAGGCCAGCTAAGTCAGCCATCATTGGTTCAAAGTCTGTCTGGCCTTCCTCCTCATGGGCAGAGCAAGTTGCCGTCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAATACTATATCTCATAATCTTTTGGCTCCTAATCAATTAAGTGCACATCCAAAGCCTCCAGTGCAGCCTCGAATTCCACTTCAGCAACATCCAAACAACCTTGTAGTCCCAGGAACATTGTCAGCGCAGTCTAATTTAATGCTTCCTTCTGTGCGTCCTCCAGGTTTGGGAAGTTTGTCTGTTAGGCCTCCAATTCAACCAGTAACATCAACTGCTCTGAACAAGCAAATGCACCCCTCTTTGGTACAGCATTCCATACATGTTGGAAACTCTACTGTAGGACATAATATTCAAATGGTTCGTCCGAATGTCAACTTTCAGCCTGGCCCCTCCATATCATCTGCTAATTCTCAGTTATTGAGTAAAGGTGATACCAAGAGAACTAATACATATTCAAACATGCTTTTGGGAGTAGAGAAAGCAAACATGGTTCGTGATTCTTCAGAATCTTCTACTCGCCCGTCAAAGTTCATGAAATTGGATGAGGAAAGAAGCACCCCTCTTTCTGCAGGGATTTCAGACATGCCTGTAACTGATGGATCATCACATCATGTACTTGGAAGAAGCTCATTACCTGTACATGCAGCTCCTAAAGCAGAAGGGCACTCTGAGCAACAATCTTCTCAGCTTCCACCTGACGTGGAGTCTGTTTTGCTTCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTGCCGCCAGAACAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATACAACCCTCATAACAAACAGGAACTCATCAATTGTTCAAATAGCATCAACTTATTTGTATACTAGCATTTGCTGTAGATTAGCTTCAGAATATCAAAATTCATTCGACCACCATTGTCTTTTTTTGTAATTTGTTTTCTAATTCCTTGTCCAAATATTTGATGTAGCATTGAGGAGCTCCAGAGTGGCGCATATTTAATCCATTAGAAGGGATATATTGTACAATAATAATTTTGGCGATAAAATTTTTGCCGTTGACATACCTGTTGTGTTGTCT 2308 0.4229 MATSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQLISEKKLNSKPVILFNFSSVDSFSFLAQGRGGPGMTTNVDPQKQVGGPAVHGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVDLGFYLRRAIVPTSKAVNLHIRLQMPNLRLVSDQIPQSLMNEGQLSQPSLVQSLSGLPPHGQSKLPSGLTPYAQEGQVNTISHNLLAPNQLSAHPKPPVQPRIPLQQHPNNLVVPGTLSAQSNLMLPSVRPPGLGSLSVRPPIQPVTSTALNKQMHPSLVQHSIHVGNSTVGHNIQMVRPNVNFQPGPSISSANSQLLSKGDTKRTNTYSNMLLGVEKANMVRDSSESSTRPSKFMKLDEERSTPLSAGISDMPVTDGSSHHVLGRSSLPVHAAPKAEGHSEQQSSQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQIQPS 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02423 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Pste4g02423 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Pste4g02423 590 CDD RRM_CSTF2_RNA15_like 9 85 - -
Pste4g02423 590 Gene3D - 1 106 IPR012677 -
Pste4g02423 590 Gene3D - 545 586 IPR038192 -
Pste4g02423 590 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 586 - -
Pste4g02423 590 MobiDBLite consensus disorder prediction 309 328 - -
Pste4g02423 590 SUPERFAMILY RNA-binding domain, RBD 5 94 IPR035979 GO:0003676
Pste4g02423 590 MobiDBLite consensus disorder prediction 476 521 - -
Pste4g02423 590 Gene3D - 179 258 - -
Pste4g02423 590 FunFam Cleavage stimulating factor 64 185 259 - -
Pste4g02423 590 SMART rrm1_1 10 83 IPR000504 GO:0003723
Pste4g02423 590 FunFam Cleavage stimulating factor 64 2 109 - -
Pste4g02423 590 Pfam Transcription termination and cleavage factor C-terminal 552 584 IPR026896 GO:0031124
Pste4g02423 590 FunFam Related to Cleavage stimulation factor 543 585 - -
Pste4g02423 590 Pfam Hinge domain of cleavage stimulation factor subunit 2 188 256 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02423 Pste-Chr4 17257923 17266474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02423 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 3.80e-07 51.2