Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02398 ATGCTTCAGAATAGACTCGTTAAGCTTCGTTCACTCTACCTTGTGGATGCACTCCGTTTGCCTCCTCCGCCCCTACCTCAAGGAAAGATGAAGGTGGTTGCTGCGTATTTGTTGGCCGTCCTCGGTGGCAACAACAACCCTTCCGCCGATGACGTCAAGAAAATTCTTGGCTCCGTTGGAGCAGAAGCAGATGATGATAGGATTAAACTATTTCTGTCTGAAGTTAAGGGTAAGGATATAGTTGAGGTTATTGCTGCTGGTAGGGAAAAACTTGCCTCAGTGCCTTCTGGTGGAGGTGGTGCTGTCGCTGTTGCCGCTGCTCCTGGGGGAGGTGCTGCTGCTGCTCCAGCTGCTGAGGCAAAGAAAGAGGAGAAAGTCGAGGAGAAAGAGGAATCTGATGATGTAAGTGATTTTTCACCTCTGCTGTTTTATTCGTGTCTAGGCAATCTAGGCTTTTTGCTTTTGGCACCTCCATTTGGTTATTGCCAGTCCAAAGTGTTCAAATTGCCAAAATTATCCTCTTTCTCGTTCCTTCCTATCACCCTCGACGCCCCCTGA 558 0.4857 MLQNRLVKLRSLYLVDALRLPPPPLPQGKMKVVAAYLLAVLGGNNNPSADDVKKILGSVGAEADDDRIKLFLSEVKGKDIVEVIAAGREKLASVPSGGGGAVAVAAAPGGGAAAAPAAEAKKEEKVEEKEESDDVSDFSPLLFYSCLGNLGFLLLAPPFGYCQSKVFKLPKLSSFSFLPITLDAP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02398 185 CDD Ribosomal_P2 30 96 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pste4g02398 185 Hamap 50S ribosomal protein L12 [rpl12]. 31 144 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pste4g02398 185 Gene3D - 29 88 IPR038716 -
Pste4g02398 185 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 30 138 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pste4g02398 185 FunFam 60S acidic ribosomal protein P2 27 88 - -
Pste4g02398 185 Pfam 60s Acidic ribosomal protein 46 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02398 Pste-Chr4 17072367 17075310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02398 30 99 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 72.857 2.09e-29 102