Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02379 GTCGGTAGTGTCGTGTACAGTAACGGAGAAAAAGAAAAGCTTGGTTAATGTTACCAAAATTAGTAGCATGCGGTGAGTTACTGAGTTGTTTTCAGTTGACAGTGTCCGTTTCAATAATCCAACAGAAGTGAAGATTGGAGGTGAAAAGGCTTAGAAGCAAGAAATGGGTAACGGCCATGGACACGGGCATCGCAAACACCGTAATCCCGTTCCTCCGTCCCATAAATACAGCCCTGAGCCAAAGCCACCGTTCCCAACCACCTCGAATTCCAAGACCAACATGCTCTCTCTTCCTTACATCCACGTCGACACCACTCTCCGCTCCCTCGCCGGCCAAGCCGAGGGTTTCGGCCGCTTCGCCATCGGCGGCCTCAACGGTCCCCTTTTCCACGTGACATCGCTAGCAGATGACGGACCGGGTTCGCTGCGTGAGGCGTGTCGCAGAAAAGAACCTCTGTGGATTGTGTTTGAGGTTTCCGGCACCATTCATCTCTCATCGTACTTGAACGTGTCGTCTCACAAGACCGTTGATGGTCGTGGGCAGAGGATTAAACTCAGCGGAAAAGGGTTGCGCCTGAAGGAATGCGAGCACGTGATAATTTGCAATTTGGAGTTTGAAGGAGGCAGAGGCCACGATGTTGATGCCATTCAGATTAAACCTAATTCCAAGCACATATGGATTGACCGTTGCACTCTCAGTGATTTTGATGATGGCCTTATAGATATCACCCGAGAAAGCACGGACATTACTATTTCCAGGTGTCATTTTTCTCAGCATGACAAAACAATGCTCATTGGGGCTGATCCATCGCATTGTGGGGATAGATGCATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACTCGACAGAGGCACCCTCGTGTTAGGTTTGCAAAAGTGCATCTGTATAATAATTATATCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTAGAAGCCCAGATATTCTCGCAACATAATATATATGAAGCAGGTCAGAAGAAATTGGTATTTAAGTACCTTACTGAGAAGGCAGCAGACAGGGAAGTGGGAGCAACTGGTTTCATAAGGTCTGAAGGAGACTTATTTTTAAATGGTGCTCAAACAGGGTTAATGACTGAGAATGTTGGGTGCAGCATATTTCACCCCAGTGAACACTATCCCTACTGGACAGTGGAAACCCCTACAGACGATCTAAAGCAGATTCTTCAACACTGCACTGGATGGCAATCTGTTGCTAGGCCAACTGATCAAAGAGTATGAGCAGAATAGAAGCTATAAGCTATTGTATAAGTATACTCTAGCAAGTTACTTTCTTGGGTGCATAAAATATATAGATTTACGGATTATTAAACAAGTACCTACAATGAATCCTCCCCAAATGTCTTCTTTAAATGTGTTATGGGTACATTTTATCTATCAGCT 1432 0.4525 MGNGHGHGHRKHRNPVPPSHKYSPEPKPPFPTTSNSKTNMLSLPYIHVDTTLRSLAGQAEGFGRFAIGGLNGPLFHVTSLADDGPGSLREACRRKEPLWIVFEVSGTIHLSSYLNVSSHKTVDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHCGDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAVCASVEAQIFSQHNIYEAGQKKLVFKYLTEKAADREVGATGFIRSEGDLFLNGAQTGLMTENVGCSIFHPSEHYPYWTVETPTDDLKQILQHCTGWQSVARPTDQRV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02379 368 Gene3D - 45 353 IPR012334 -
Pste4g02379 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Pste4g02379 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Pste4g02379 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Pste4g02379 368 MobiDBLite consensus disorder prediction 1 17 - -
Pste4g02379 368 MobiDBLite consensus disorder prediction 1 38 - -
Pste4g02379 368 SMART amb_all 85 283 IPR002022 -
Pste4g02379 368 PANTHER PECTATE LYASE 18-RELATED 49 318 IPR045032 GO:0030570
Pste4g02379 368 Pfam Pectate lyase 113 276 IPR002022 -
Pste4g02379 368 SUPERFAMILY Pectin lyase-like 56 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02379 Pste-Chr4 16973712 16976394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02379 40 366 Polysaccharide Lyase AT3G09540 70.948 2.70e-172 483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02379 4 16973712 16976394 Pste4g02379 4 16973712 16976394 ECH