Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02378 TCTCTCTCTCTCTCTCTCTCTCTCTCATGGACTTGCAGTTGAAGCAATGGAGAAACCAACACGAGTCAGAGCAAGAACATTCCCCCAACATGCCAAAATTTCTCCCTCAACAACCACCACTCCCTGCCTCTGCTCTCCCTCTGTTTGTACCTCTACCCAACACCAAAGTCTGCACCTTGTCAGCATTTTCAGATTCCTTGCCACCTGCTGCTCCCAGATTTCCAAGCATGGAGAGTTGTTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGACTCTTATTTTCAGATACATGCTGGCTGGTGCTCCTGTTCCTCCTCACCTCCTTCATCCAATCAAGAAGAGCTTCCTTCATTCCCCTCCTTCTTTCCTTCAACATTATCACCCTCCTTTGTCGGAAACAGGGTACTACTGGGGAAGAGCGGCGGCGGATCCGGAACCGGGGCGGTGCCGGAGAACCGACGGGAAGAAGTGGCGGTGCTCGAAGGACGCGGTGGCGGGTCAGAAGTACTGCGAGCGGCACATGCATCGTGGCCGAAACCGTTCAAGAAAGCATGTGGAACAACGTGATGGCTCTGCCTCTCTCACTGCTATAGCCTCTGTTTCTTCTTCACACTCTGCTTCTGTCAAATCCTCCCCCTTCGATCTCACTCAAAGTTCCTCTGGGGCCAAGAGTGACAACAAGAACATGTTTGAAAACCATGATCATGTGGATGGGGATGGAAAATCTGATGGCCATGTCCTGAGACATTTCTTTGATGATTGGCCTAGGACACTGCATGAGCCTGACAATGGTGGAAGAAATGGTAGCCGTAACAACAACTCTGGAATATGTCTTTCTATGTCGACAACTGGAATCACTTCCTCGGATGTGTCATTGAAATTATCCACCGGGTATGGAGAGGAAGTGTGCCACGTGGCATCCATGGGAGGACCACTTGCAGAGGCATTGAGATCATCAACCAGCTCCACTTCTTCACCAACCAGTGTTCTGCTTCAGTTACCTCCTAGTTCTGCATGTGAAACCAACATCATTAGTGCCTAAGATTTGGAGTTTCTGTGTTCTTTAGTTGCTTTGGAGAATTATTGGA 1092 0.4945 MDLQLKQWRNQHESEQEHSPNMPKFLPQQPPLPASALPLFVPLPNTKVCTLSAFSDSLPPAAPRFPSMESCFSFAQWQELELQTLIFRYMLAGAPVPPHLLHPIKKSFLHSPPSFLQHYHPPLSETGYYWGRAAADPEPGRCRRTDGKKWRCSKDAVAGQKYCERHMHRGRNRSRKHVEQRDGSASLTAIASVSSSHSASVKSSPFDLTQSSSGAKSDNKNMFENHDHVDGDGKSDGHVLRHFFDDWPRTLHEPDNGGRNGSRNNNSGICLSMSTTGITSSDVSLKLSTGYGEEVCHVASMGGPLAEALRSSTSSTSSPTSVLLQLPPSSACETNIISA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02378 339 PANTHER GROWTH-REGULATING FACTOR 5 28 282 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pste4g02378 339 MobiDBLite consensus disorder prediction 220 235 - -
Pste4g02378 339 Pfam QLQ 72 104 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste4g02378 339 Pfam WRC 137 179 IPR014977 -
Pste4g02378 339 ProSiteProfiles QLQ domain profile. 71 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste4g02378 339 MobiDBLite consensus disorder prediction 163 235 - -
Pste4g02378 339 MobiDBLite consensus disorder prediction 185 219 - -
Pste4g02378 339 MobiDBLite consensus disorder prediction 1 27 - -
Pste4g02378 339 SMART QLQ_2 70 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste4g02378 339 MobiDBLite consensus disorder prediction 1 19 - -
Pste4g02378 339 ProSiteProfiles WRC domain profile. 136 180 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02378 Pste-Chr4 16971632 16974427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02378 1 317 GRF Transcription Factor Family AT3G52910 44.118 1.86e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pste4g02378 WRC 2.1e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02378 4 16971632 16974427 Pste4g02378 4 16971632 16974427 ECH
Pste5g02235 5 14939945 14942983 Pste4g02378 4 16971632 16974427 PCT