Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02355 CCGCTTTTCCCATTCACACCCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCCTCTTATTTCCAATTCTTCGCACCCTCTTTCTCTCTCAACTCCCATTCATTCATGGAAATGGAAGATCACCACCATCATCACCATCCACATCATCATCATCATCAGTTTTCCATGAACGATCTAAGGCAAGTTGTTAACGGGCCCAGGCCGTCCCACACCACCTTCCCCTCCATGCCGCCGCACCCCACTGCCGAGCTTTTCCCCGGCCACCGGAATCTCGCACCTTTGCCCACCCCACAGCACTTCGAGGTTATGATGTTTGGTCGCGACATAATGCCACCTGGCCTTCACGACTTTGCTTCCACATCCCATGATTGTGCTGCTGCTGTTGCTGCTTCTGTTTCTGCTTCCATCACCTTACCCACTCCACCTGTTGCTACCGCCTTTGATGCTGTTGAGGGTGCAGGTTGCGTCGGTGGAGACCCCTCCACTGGAAGATGGCCCCGACAAGAGACTCTCACTCTCCTTGAAATCAGATCTCGCTTAGACCCTAAATTCAAAGAGGCTAATCACAAAGGACCCTTATGGGATGAAGTCTCTAGGATCATGTGCGAAGAACATGGGTATCAAAGGAGTGGTAAAAAGTGCAGGGAGAAGTTTGAGAACTTGTACAAATATTACAAGAAGACAAAAGAAGGTAAGGCAGGAAGACATGATGGGAAGCATTACAGATTTTTTCGTCAACTTGAGGCCTTATATGGAGAAAACAGTAACACAGTTTCAGTCCCAGAAACCAATGTTGTTGGCAACATTCATTTTCAAGCTAGCAGCCATGGCCCCTCCCAAACAAATCAAGATAAGTTCCCCTCTCACAATAACAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTAACTTTGACACATCAACATCTGATGATGATGACAACGATCACAGCATGGAGAATGAGTCCATGGAGAAGAGGAGAAAGAGGAAGAGTGGGGGGAGTTGGAAGGTGAAGATAAAAGACTTCATCGATTCACAGATGAAGAAGCTGGTGGAGAAGCAAAAGGAGTGGTTGGATAAACTGGTAAAGACACTGGAAGAGAAAGAAAAGGAGAGGATGTTAAGAGAGGAAGAGTGGAGAAAACAAGAGGCATGCAGGTTAGAGAGGGAGCAAAAGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCTAGAGATGCTGCTTTAATGGAGGCTTTGCAAAAGTTAACTGGGAGAGAAATCATGAAGGCTGAAACTCCTGAAGGTATAAATGTAATGGCAGCTGATCTTCAAAACCACAGTGAAAACCAGAATAATGAAGATGAGAGTGAAATCTTAAATAGCAATGCTGTCATAAGAGGTACTGATAGCTGGCAAGAATCCGAAATCACAAGGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTTTCCATATAGTGAAATTTCAGAAGAGGTTTCATGGGAGGTACTAGCTACCAAAATGGCTTGTTTTGGATACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAATTATCCGTAACAATCCAAGGGAGGATAGCAAAGAAGGGAACAAGAAACGCAAGGACAACTCTAGAAGCTGTTTTTACTTCAAGAACAATGATGATCAACAATCTTCCTTGTACGATCAAGGAAGTGCTTATTGTGATGACATCAATGATCAAGGGAAAGAGATTGAGAGGCTACAGATAAACAATGGTTCTTCACCTTCAAAATCCAATGTTGGAAATGTTGCTCCATCTGATAGCTGTTTTCCCTTCTTGATGAGTGCTGAGGGTGCAAGCCTGTGGGAGAACTATGGCTTAAAGCTTAATAAAGAAAATCAAAACCACTAA 1879 0.446 MEMEDHHHHHHPHHHHHQFSMNDLRQVVNGPRPSHTTFPSMPPHPTAELFPGHRNLAPLPTPQHFEVMMFGRDIMPPGLHDFASTSHDCAAAVAASVSASITLPTPPVATAFDAVEGAGCVGGDPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNTVSVPETNVVGNIHFQASSHGPSQTNQDKFPSHNNKHCDSLSLTNSTNFDTSTSDDDDNDHSMENESMEKRRKRKSGGSWKVKIKDFIDSQMKKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEACRLEREQKFWAKERAWIEARDAALMEALQKLTGREIMKAETPEGINVMAADLQNHSENQNNEDESEILNSNAVIRGTDSWQESEITRLQQLRAEMETRFPYSEISEEVSWEVLATKMACFGYERSALMCKEKWEIIRNNPREDSKEGNKKRKDNSRSCFYFKNNDDQQSSLYDQGSAYCDDINDQGKEIERLQINNGSSPSKSNVGNVAPSDSCFPFLMSAEGASLWENYGLKLNKENQNH 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02355 591 MobiDBLite consensus disorder prediction 1 20 - -
Pste4g02355 591 ProSiteProfiles Myb-like domain profile. 429 487 IPR001005 -
Pste4g02355 591 FunFam Trihelix transcription factor GT-2 430 492 - -
Pste4g02355 591 Coils Coil 317 344 - -
Pste4g02355 591 MobiDBLite consensus disorder prediction 26 57 - -
Pste4g02355 591 Pfam Myb/SANT-like DNA-binding domain 129 215 IPR044822 -
Pste4g02355 591 Pfam Myb/SANT-like DNA-binding domain 428 515 IPR044822 -
Pste4g02355 591 SMART sant 426 489 IPR001005 -
Pste4g02355 591 SMART sant 126 189 IPR001005 -
Pste4g02355 591 CDD GT1 430 492 - -
Pste4g02355 591 MobiDBLite consensus disorder prediction 237 273 - -
Pste4g02355 591 CDD GT1 129 194 - -
Pste4g02355 591 MobiDBLite consensus disorder prediction 237 298 - -
Pste4g02355 591 FunFam trihelix transcription factor PTL-like 130 192 - -
Pste4g02355 591 ProSiteProfiles Myb-like domain profile. 122 187 IPR001005 -
Pste4g02355 591 Gene3D - 130 192 - -
Pste4g02355 591 Gene3D - 430 491 - -
Pste4g02355 591 PANTHER FI21293P1 124 539 - -
Pste4g02355 591 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02355 Pste-Chr4 16808066 16811036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02355 15 587 Trihelix Transcription Factor Family AT5G03680 44.901 1.52e-144 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pste4g02355 Myb_DNA-bind_4 3.4e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02355 4 16808066 16811036 Pste4g02355 4 16808066 16811036 ECH
Pste5g02212 5 14655564 14658965 Pste4g02355 4 16808066 16811036 PCT