Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02307 CTAACCAATGAGAGACAGAAGGGAAGGCAAAGGAACGTGAAAGAAAAACGGACGGTGGCGATAGAAGCCCCACTCTCATCTCCATTCTCCATCGTCTCCTCTCTCCTCTCTTCTCCAGCGTCCATTTCTCGCGCCAATTACAAATCACATCACATCAGGGTTCCGGCGACCATGGCCGATACTCCTGCGAGTCCAGCTGGCGCCGGCGGCAGCCACGAGAGCGGCGAGCACAGCCCCCGCTCCACTTTCCGTGAACAGGATCGCTTCCTTCCCATCGCCAACATCAGCCGCATCATGAAGAAAGCTCTTCCTGCCAATGGTAAAATCGCTAAAGACGCCAAGGAAACTGTGCAGGAATGCGTTTCCGAGTTCATTAGCTTCATCACCAGCGAGTACACTTCTTTGGCGAGCGATAAGTGCCAAAGAGAGAAGAGAAAGACCATTAATGGCGACGATTTGCTTTGGGCAATGGCTACTTTGGGTTTCGAGGATTATATTGATCCACTTAAGATTTACCTCGCCGCTTACAGAGAGATTGAGGGTTATGAATTTTTATGTGCCAGGGTGATACCAAGGGTTCGGCCAAGGGTGGAGATACGTCTGCTAAGAGAGATGTTTATCCAAGTTCTAATGCTCAGGAGCTTTGACACCTCTGTAGAAGAGCACCTCGATGTGTGTTGTCTTAAGTTTTCACCTCGATGTGTGTTGTCCTAA 714 0.5 LTNERQKGRQRNVKEKRTVAIEAPLSSPFSIVSSLLSSPASISRANYKSHHIRVPATMADTPASPAGAGGSHESGEHSPRSTFREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYTSLASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLAAYREIEGYEFLCARVIPRVRPRVEIRLLREMFIQVLMLRSFDTSVEEHLDVCCLKFSPRCVLS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02307 237 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Pste4g02307 237 PRINTS CCAAT-binding transcription factor subunit A signature 140 158 - -
Pste4g02307 237 PRINTS CCAAT-binding transcription factor subunit A signature 159 177 - -
Pste4g02307 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 157 IPR003958 -
Pste4g02307 237 Gene3D Histone, subunit A 76 183 IPR009072 GO:0046982
Pste4g02307 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 73 181 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pste4g02307 237 FunFam Nuclear factor Y, subunit B1 79 182 - -
Pste4g02307 237 SUPERFAMILY Histone-fold 86 181 IPR009072 GO:0046982
Pste4g02307 237 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02307 Pste-Chr4 16594414 16595645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02307 58 181 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.778 4.35e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pste4g02307 CBFD_NFYB_HMF 5.5e-24 CL0012