Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02287 ATGGAGTGGAGTGGGAGCACAAGACATTATGTTCCTCGACCAGAGTCTTCCTTGAGCTTTCTTTACAACTACAACTACACCCCATACCCAGGCAAAGCATTTTCAAAACACTATCTACTCTTAGTCCGTTTTTATCCATTTAAGAATATATTAAAACTCTTCACTAAACCCTCTGGATGTGATAATTCAGGAATGGAAGTGAAGCAACAAACAGTACTAGCAGAGACAGGTTCATCCATGGAAAAAATGAACTGCGGGAACCAGGACAAGAAGAAGCGTTTAACAACTGACCAGTTAGACTCACTGGAAAGTAGTTTTCAGAAGGAGATAAAGTTGGACCCAGATAGAAAGATGAAACTTTCTAAGGAGTTAGGGCTTCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAAAAACAGAAGCTTGAGGAAGAGGTAATGAAGTTGAAGACTATGCTGAGAGAGCAAGGTTCTAGAACTCAAGTATCAACTGGTTACACAGAAATCTCAGGGGAAGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCCAAACGGGGAACAGTGCATCAGCATCAGCATCAGCATCAGCATCAGCAGCAGAATATTAGAGAGGGAAACTGTTCTTTCACATTGGAAGATTATAACACAGTTCCGGTACTACCCTATTGGCCTGGGGTCCCTTATTATCCCTAA 777 0.4221 MEWSGSTRHYVPRPESSLSFLYNYNYTPYPGKAFSKHYLLLVRFYPFKNILKLFTKPSGCDNSGMEVKQQTVLAETGSSMEKMNCGNQDKKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKTMLREQGSRTQVSTGYTEISGEETVESTSEALRCSKRGTVHQHQHQHQHQQQNIREGNCSFTLEDYNTVPVLPYWPGVPYYP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02287 258 CDD homeodomain 90 146 IPR001356 GO:0003677
Pste4g02287 258 SMART HOX_1 88 149 IPR001356 GO:0003677
Pste4g02287 258 Pfam Homeodomain 90 144 IPR001356 GO:0003677
Pste4g02287 258 Pfam Homeobox associated leucine zipper 145 179 IPR003106 GO:0006355|GO:0043565
Pste4g02287 258 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Pste4g02287 258 Gene3D - 82 153 - -
Pste4g02287 258 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Pste4g02287 258 FunFam Putative homeobox-leucine zipper protein ATHB-51 87 150 - -
Pste4g02287 258 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 79 224 IPR045224 GO:0003700
Pste4g02287 258 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Pste4g02287 258 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Pste4g02287 258 Coils Coil 137 185 - -
Pste4g02287 258 SUPERFAMILY Homeodomain-like 80 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02287 Pste-Chr4 16448157 16450225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02287 86 184 Homeobox Transcription Factor Family AT2G36610 66.355 5.35e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste4g02287 Homeodomain 6.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02287 4 16448157 16450225 Pste4g02287 4 16448157 16450225 ECH
Pste4g02287 4 16448157 16450225 Pste5g02163 5 14214323 14216169 PCT