Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02266 GTGGGGTGGAGGGTGGAGGGTGTTGCAGTATGCAGAGAATGGAAAATGAAGAGCAGAAGCGCGGTAAACAATAATCGGATAAACACTGGTGGAGGTCTTATGCTTAGGAGTCAGACAAAACTTCCACATGTCAAAAAAGCAACGGTGCCAAATGTAGAGGGACGGCGCACCAAACAGACAGGTGGAGGAGTAGAATATGACATGCATGAGAGATCATCGATTGATATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAGCTTGTGGGATATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGGTATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTACAGGGACAAGAACTAACAGGGCCACTGCAGCTGGATTCTGGAAAGCAACGGGAAGAGACAAGGCTGTGATGTCTAAAAATAGAATCATAGGGATGAGGAAGACCTTGGTGTTCTACAAGGGACGTGCCCCTAATGGAAGAAAAACTGATTGGATTATGCATGAATATAGGCATCAAACTTCTGAGCATGGCCCTCCCCAGGCAAGATGGGTTGTGTGCAGAGCATTTAGAAAGCCTAGTCCAAGTCACAGGCAAGGTTTTGACCCATGGTGCAGTGGCAGTCAACAACAGTTTTTCAGAGATCAAAGCTATGCAAGACCCTTATCAATTGCTGACATTTTGAATGAAACAAATGTGCCTCACCCTGCTGAAGGTACAAGTTTTAGTCAACCCTTCAGCTCGGATCAGCAACACTTGATTCTATCAAACCAAACTGCTATGGACAAACAACTCATTGAGCTTCCACAACTAGATAGTCCCACTGCAAGTTTGGCAATGAAAGAATGTAACCAACAACACCACAATGGCCTAACAAATGAGGAGTATTGCAGTGATGAAAGGAGCAATAGCAGTGCACAAGGTATCGATTGGAAGACCTTCGACAACTTGTTTGTCTCACAATTGAGTGATAATTCAGCTTATTTTTCACATCCAAACTTGCCCTTCATGATGCCCCATAACCATGATCAAGCTAGTCATATCCTAGGATGCTTCCCTGATTCCTAA 1176 0.4345 VGWRVEGVAVCREWKMKSRSAVNNNRINTGGGLMLRSQTKLPHVKKATVPNVEGRRTKQTGGGVEYDMHERSSIDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQARWVVCRAFRKPSPSHRQGFDPWCSGSQQQFFRDQSYARPLSIADILNETNVPHPAEGTSFSQPFSSDQQHLILSNQTAMDKQLIELPQLDSPTASLAMKECNQQHHNGLTNEEYCSDERSNSSAQGIDWKTFDNLFVSQLSDNSAYFSHPNLPFMMPHNHDQASHILGCFPDS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02266 391 FunFam Nac domain-containing protein 86 89 231 - -
Pste4g02266 391 ProSiteProfiles NAC domain profile. 80 228 IPR003441 GO:0003677|GO:0006355
Pste4g02266 391 Gene3D NAC domain 89 231 IPR036093 GO:0003677|GO:0006355
Pste4g02266 391 Pfam No apical meristem (NAM) protein 81 207 IPR003441 GO:0003677|GO:0006355
Pste4g02266 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 77 321 - -
Pste4g02266 391 SUPERFAMILY NAC domain 71 228 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02266 Pste-Chr4 16352733 16358311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02266 76 391 NAC Transcription Factor Family AT1G71930 53.916 3.46e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste4g02266 NAM 1.1e-36 No_clan