Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02254 CTCACACTTACTCAGTGGCACTACCCTCTCTTTTCCTTTTCTTTTTCTTCGTTAACACACTCTCACAGAATTTTCAGAGAAAACGCCGTCGTTCAAGTTAGGGTTTTAGACGCCACCGTTCTTTTCGTTCTTTACTGCTCCCATCCATTTCCGATTCATCAATGGCGGTTGTCGCCACCGTCATGGCATCGCTTTACGTTGGAGACCTCCACCCCGACGTCGACGAGCCCCGACTCTTCCAGGCTTTCGCCGAGTTCAATAGCATCGTCTCCATTCGCGTCTGCAGAGACCGCGACACCAAGACGTCGCTCGGTTACGGTTACATCAACTTTTCGTCTCTGCAAGACGCAATTCGTGCAATCAAGGTAAAAAATAACTCTTATCTGAATGGAAAAGTGATGAGGGTCATGTGGTCACATCGTGACCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGAATCCATAGATAATGCGGGGCTACATGATTTATTTCAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATTTTTGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGACAGAGGAATCAGCAAATAAAGCCATTGAGAAGCTGAATGGCTTTACACTGAGAGACAAGCAAATATATGTTGGGAAGTTTGTTCGTAAAGGCGACCGCCATGATGCCAAATATACAAATTTGTACGTTAAAAACTTGGACTCAGATATTACAGAAGCAATGCTTCAAGAAAAGTTCTCCTCTTTTGGAAAAATTATTAGCTTAGCTATTGCAAAGGATGGGAATGGGCTATCGAAGGGTTTTGCATTTGTGAACTACGATAATCCCGATGATGCTAGGAAGGCGATGGAAACAATGAATGGATTACAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATGTTATATCACGAATTTGAGAAGAAACGCAAGGAAAAAATATTGAAATATAAGGAATCTAATCTTTACGTGAAGAACATTGATGATGGTGTCAATGAAAAAGAACTACGAGATCTATTTAGTTCATGTGGCACAATAACTTCTGTAAAAGTTATGCGAAATGACAAAGGGATAAGCAGGGGGTTTGGTTTTGTTTGCTTCTCCAACTCTGAGGAGGCTTATAAAGCTTTGAGCTCTTTTAATGGATTCATGTTCCATGGTAAACCACTGTATATTTCTATTGCTCAGAAGAAAGAGGATAGGAAATCACAATTGAAGCTCCACTACGCACCGCAACAAGCAGGATTGGATAGACCTTCTCCTGCAGCGATCTCTGGTGGATTTCCACCCTACTTCTGTCCTAGCGTTGATTCACAGATGCTTCAATCTGGGGTGTGGTATCCACCTCTGGAATGGAGGACTAATGACTTTGCACCTCCCACTAGATCATTTCAACAATTACAGGTTCCTATTGTTCCTAACATTACCGGGCATCATAGGGAAAACAGGGTCAGGATGAATGGGCATATAAATTCACTGGTAAATGCGCACTCTGGTATATATATTACGGAACTGCAACACTATTATCATCCAGTGGCCTCTTCAAGAGCCGAGTCTTTGGCAGCTGCAAAGATTCCAGTGATGCTTTTGGAGATGGACAATGGACTCCTCCTGGAATCAAGACAGACTTTCCTCATAAATCAA 1706 0.422 MAVVATVMASLYVGDLHPDVDEPRLFQAFAEFNSIVSIRVCRDRDTKTSLGYGYINFSSLQDAIRAIKVKNNSYLNGKVMRVMWSHRDPNARKSGRGNVFVKNLAESIDNAGLHDLFQKYGNILSSKVVIFEDGKSKGYGFVQFETEESANKAIEKLNGFTLRDKQIYVGKFVRKGDRHDAKYTNLYVKNLDSDITEAMLQEKFSSFGKIISLAIAKDGNGLSKGFAFVNYDNPDDARKAMETMNGLQFGSKNLYVARAQKKAEREQMLYHEFEKKRKEKILKYKESNLYVKNIDDGVNEKELRDLFSSCGTITSVKVMRNDKGISRGFGFVCFSNSEEAYKALSSFNGFMFHGKPLYISIAQKKEDRKSQLKLHYAPQQAGLDRPSPAAISGGFPPYFCPSVDSQMLQSGVWYPPLEWRTNDFAPPTRSFQQLQVPIVPNITGHHRENRVRMNGHINSLVNAHSGIYITELQHYYHPVASSRAESLAAAKIPVMLLEMDNGLLLESRQTFLINQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02254 515 FunFam Polyadenylate-binding protein 178 269 - -
Pste4g02254 515 SUPERFAMILY RNA-binding domain, RBD 285 374 IPR035979 GO:0003676
Pste4g02254 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 261 IPR000504 GO:0003723
Pste4g02254 515 Gene3D - 181 284 IPR012677 -
Pste4g02254 515 Gene3D - 285 381 IPR012677 -
Pste4g02254 515 CDD RRM4_I_PABPs 287 364 - -
Pste4g02254 515 FunFam Polyadenylate-binding protein 91 177 - -
Pste4g02254 515 SMART rrm2_1 10 83 IPR003954 GO:0003676
Pste4g02254 515 SMART rrm2_1 98 170 IPR003954 GO:0003676
Pste4g02254 515 SMART rrm2_1 185 257 IPR003954 GO:0003676
Pste4g02254 515 SMART rrm2_1 288 360 IPR003954 GO:0003676
Pste4g02254 515 SUPERFAMILY RNA-binding domain, RBD 10 177 IPR035979 GO:0003676
Pste4g02254 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 364 IPR000504 GO:0003723
Pste4g02254 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Pste4g02254 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Pste4g02254 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Pste4g02254 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 254 IPR000504 GO:0003723
Pste4g02254 515 PANTHER OS02G0815200 PROTEIN 183 366 - -
Pste4g02254 515 Coils Coil 256 276 - -
Pste4g02254 515 Gene3D - 98 180 IPR012677 -
Pste4g02254 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 174 IPR000504 GO:0003723
Pste4g02254 515 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 9 385 IPR006515 GO:0003723
Pste4g02254 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Pste4g02254 515 Gene3D - 6 97 IPR012677 -
Pste4g02254 515 SMART rrm1_1 98 170 IPR000504 GO:0003723
Pste4g02254 515 SMART rrm1_1 185 257 IPR000504 GO:0003723
Pste4g02254 515 SMART rrm1_1 288 360 IPR000504 GO:0003723
Pste4g02254 515 SMART rrm1_1 10 83 IPR000504 GO:0003723
Pste4g02254 515 SUPERFAMILY RNA-binding domain, RBD 181 268 IPR035979 GO:0003676
Pste4g02254 515 FunFam Poly(A) binding protein cytoplasmic 1 like 279 368 - -
Pste4g02254 515 CDD RRM2_I_PABPs 95 171 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02254 Pste-Chr4 16268385 16273304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02254 7 451 Eukaryotic Initiation Factors Gene Family AT2G36660 54.767 2.50e-170 493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02254 4 16268385 16273304 Pste4g02254 4 16268385 16273304 ECH
Pste5g02147 5 14025951 14030497 Pste4g02254 4 16268385 16273304 PCT