Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02244 ATGTCACATCACCGAGGGAGAAGCGGAGAAAGAAGAGACCTTGCATTGCTAATGGGGATTAGAGAAGAGACGTCAGTGAGAGAGAAAGCTGCGATGGCGAACAACAGACTACAAGGCACCATGCCACCACTGCAAAACGATGAGCAACAATGGCGAAGGGCTGCCAAAGGATTGCAATCTCTACACCTTCTTTGCTACCGTCTTCATTTCCCGTGCTTCTCTTCAGTTAGCAGTGAGAAAGAACAAAGTAACCAAGAAAACATTGGAGGAACAACCAATGATGTCTCTCTTTCAGCTGAGGGTCATCTAATTCCAAGCCCAGATTTTGTCCTTGCAGCATCCTCTGGAAGAAATGGGAGCCATTGGACTTGTCTCCCTAAACCATCTCATCATAACTATGTTAAGTATCTTTCAGAATCCTCAACCTATCTGCCACACACTTCCACTGAATACATGATGGGGAGCACTTACCATCTACCTGTTGCCAACATCAATGATGGTAATAGTGGGGTTTATGGAACAGACAAAAGCTTCTTTCACAATGATCCAGGAAAAGTTTGTCCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGACATTAGGAAGTTGGGGTTTTGGAGAGCTGATGAAGGAGATCATGCAATTAAAGCTGAAACTGAAAGTGGTCTAAATCTTTATGCTGAGAGTCTTGCTTCATGGACAGCAGATTCAGTTGGAGATAAGCATAATGCTCCACACGATCCAATGGTTATGGTTGGTGCGTCTGCTTTACTTCCCAAACCAGGATGCAGTTCCTCCAAACAAAAAGCACGTATCACTGACCGCCAACGCAGGCAGCGCATCGCTGACAACCTCAAAGCCTTGCACGAATTGCTTCCAAATCCCGCAGAGGGAAGTCAAGCATACATACTGGACGATATAATTGACTATATCAAATATTTGCAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGCGGAATCAACTGCTACGCCACTAGTTTTTCATGAGGGTTACGGTCATTATATTAACCAACAGATGCTCAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCTGCTGCAGCTAGTCAGCTACTAGAGAGTAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGAACTGTGTGAGGCTATGCAAATGTTTGGTGGGAGTGCACTTGTTTGA 1212 0.4422 MSHHRGRSGERRDLALLMGIREETSVREKAAMANNRLQGTMPPLQNDEQQWRRAAKGLQSLHLLCYRLHFPCFSSVSSEKEQSNQENIGGTTNDVSLSAEGHLIPSPDFVLAASSGRNGSHWTCLPKPSHHNYVKYLSESSTYLPHTSTEYMMGSTYHLPVANINDGNSGVYGTDKSFFHNDPGKVCPFKPIGSSSNDLDIRKLGFWRADEGDHAIKAETESGLNLYAESLASWTADSVGDKHNAPHDPMVMVGASALLPKPGCSSSKQKARITDRQRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYIKYLQLQIKEQSGSRLQAESTATPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAAASQLLESKGLFLLPMALVDELCEAMQMFGGSALV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02244 403 CDD bHLH_AtbHLH_like 273 321 IPR045239 -
Pste4g02244 403 Pfam Helix-loop-helix DNA-binding domain 268 316 IPR011598 GO:0046983
Pste4g02244 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 331 IPR036638 GO:0046983
Pste4g02244 403 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 118 386 - -
Pste4g02244 403 SMART finulus 272 321 IPR011598 GO:0046983
Pste4g02244 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Pste4g02244 403 Gene3D - 265 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02244 Pste-Chr4 16215048 16224036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02244 273 393 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 39.837 1.05e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g02244 HLH 5.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02244 4 16215048 16224036 Pste4g02244 4 16215048 16224036 ECH