Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02228 ATGAATCTGATACCTGCTGTTAATCTATGGTATGTAACATCTGTATTTTGCATGGACATCTATGTTGAATGGTATATTTCTTCTAATGTACATCATATTAGTTCAGATCCTTCTGAGTTTAAAATGGATCCAAAAGGAAGCTTATGCGCTAACAACTGTACTAGGTCCTCTGCGTTAACCTCTCCTGGGAATGGATTACAAACAAATTTGTCCTCAGATCCTCCCTCTTTCTATGGGATTAGGATTGAGTCACCTTTCAAAGAACTCAACCCACCTTCTCCTCCAACCCATTCTGTACTTCCATGTGAATCAAACACTGACATTGAAATCCCTGACCAAGAAAATTGTCCACTGAGTGACTCATCTCATACCAGTAAACTCCAAGATTGGAATCCAAGTGCGATGTTGAATAACCTTTCCTTCCTCGAAGAAAAGATTTATCAGCTCCGGGATCTAGTTCATTTAATTGTCAATAAAAAATGCCAACCCTTTGGACAACCTCATGAGCTAGTGACTCAGGAACAGCAGCTCATCACAGCTGATCTTACATCAATTATTGTTCAATTGATTTCTACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTCACAAGCACGAATCCCTTGGTTGGCCAGCTTGACCAGCTTCATGGGATTAACCTGCCTTTTGGATCAAACCCAAGTAGTGGTATTAGGCCACAAAATAACAGTGGAAATAAACCGTTTGATCAACCCAATCAGAATGGTCTTCCAAATAATGTTGAAATGGAGCAAAATTACAATATGGAAGAACATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAATCTTCCACCTGGTTCCTATGAGATTTTACAATTAGAGAAAGAAGAAATCCTTGCACCTCACACACATTTCTGTACAATATGTGGGAAGGGATTCAAGAGGGATGCGAATCTCCGAATGCACATGAGAGGCCATGGTGATGAGTATAAAACTCCTGCAGCTCTTTCAAAACCACACAAAGAAACTGGGTCTAAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACCATTTTGTGTGTCAAAAACCACTACAAGAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCCACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGCGGCACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTTCAAGGCCATACACCAGCTATTCCTTTGGATGATTCCAAAGCAGTGGCTGAGCCACCTGATCTCCAGAACAGAGAAAGCAGCAATATGGTAGGAGGAAGTATGAACTTCAGTTTTGGGTCAAATCCTTCAAGTGAAAATGTAGTGCAAAACATGATGGATATGAAAGCTAATATTGATGACCCTATGAATTATTTCTCATCGTTCAACTTCGAGGGCTGTAACTTTGGGTTTAATGAATTCTCCCAACTTCCATTTGAAGATTCAGAAGGTTCCTTCTCTTTTCTTATGTCCGGATCCTTTAATTATGCTCCTAAATTTGGTGGCGGTGAATCTAGTTCTGATAATATCTAGTAACATGTTAATCTACATAATGTCTGTTTTCTTTATTGCCCTCTTGACCAATAATCCTTTTTTTTTTGTCAAAATTTTAAAGTCAGGCAATCTCATGTACTCCTCATTTCTTACAGTTTATGTGAAGAAAAAATTTCAT 1801 0.397 MNLIPAVNLWYVTSVFCMDIYVEWYISSNVHHISSDPSEFKMDPKGSLCANNCTRSSALTSPGNGLQTNLSSDPPSFYGIRIESPFKELNPPSPPTHSVLPCESNTDIEIPDQENCPLSDSSHTSKLQDWNPSAMLNNLSFLEEKIYQLRDLVHLIVNKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTSTNPLVGQLDQLHGINLPFGSNPSSGIRPQNNSGNKPFDQPNQNGLPNNVEMEQNYNMEEHEPKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALSKPHKETGSKPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDSKAVAEPPDLQNRESSNMVGGSMNFSFGSNPSSENVVQNMMDMKANIDDPMNYFSSFNFEGCNFGFNEFSQLPFEDSEGSFSFLMSGSFNYAPKFGGGESSSDNI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02228 553 ProSiteProfiles Zinc finger C2H2 type domain profile. 301 328 IPR013087 -
Pste4g02228 553 ProSitePatterns Zinc finger C2H2 type domain signature. 303 323 IPR013087 -
Pste4g02228 553 MobiDBLite consensus disorder prediction 222 254 - -
Pste4g02228 553 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 122 517 IPR044300 GO:0010044|GO:0010447
Pste4g02228 553 Gene3D Classic Zinc Finger 285 356 - -
Pste4g02228 553 SMART c2h2final6 301 323 IPR013087 -
Pste4g02228 553 SMART c2h2final6 350 383 IPR013087 -
Pste4g02228 553 SMART c2h2final6 388 410 IPR013087 -
Pste4g02228 553 SUPERFAMILY beta-beta-alpha zinc fingers 299 326 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02228 Pste-Chr4 16142699 16144646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02228 269 551 C2H2 Transcription Factor Family AT1G34370 69.550 1.48e-137 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g02228 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02228 4 16142699 16144646 Pste4g02228 4 16142699 16144646 ECH