Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02224 CTCTCTCTCTCTCTCTCTCTCTCTGATCATTACTTACCCAACAAACGTTCCTACATCTTCTTCTTACAGACATATGGTAATTCTTGGATCGCCCGCGTATCCACCTCAAAGTCATACACCTTTTTTAAATCTCTCCCACTCATATCTGCACGTCCTTGGAACCTCCCTTTACCTTATTTTCTCTCTTCCTTTTCGTTAGGAATTATAATTAAAAGGTTTGATTTTCAGCTCAGATCCACGCCAACACTCTTTTTCATTGCCTATTTACTTCTCACCAAAACCCAGGATCCAATTTTTCCACTTTTTCACCTTTTTCCCACTTTTGGGTAAGTATTTTGAAGCAAGATGGATATGGTTCCAGAGATGTAACCAAAAGCCTGCGGTTCCAAAACCCTGTTTGGAACAATGGCTGCGCCACTAGGCAATAGGCTCCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAACGGGGCAATTAAGACTCGGAAAACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCTTCTCTCCAAAGAAGTCAGCAACTTAGAGAACTCTATGAATCACTGTCCGCCGGAGAGACAAACCCGCCGGCTCGCCGCCCTTGCGCCGCCTTGTCACCGGAGGACCTAACAGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTCGGCTTGCCTGGAAAGGCATATGCTAGGAGGAAGCATGTGTGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGAGTGCTCGTATACAGTCTGATAGGTTTGGCATATACGAAGTGCAGACCGTGGTTTGCATTCCTTTATTGGACGGTGTGGTTGAGTTTGGCACAACGGATAAGGTTCAAGAAGACCTTAACTTGGTCCAACACGTGAAGAGCTTCTTCATAGACCACCACCACTACCCTCTTCCGCCGAAGCCCGCCCTGTCGGAGCACTCAACCTCCAACCCCACCTCCTCCTCCGACCACATCCCGGTCGTCATGTACACCGTGGCAGACCCGCCCGCTGCCCATCTCAACCAAGACGACGACATGGACGAAGACGAAGAGGACCAAGAGGAGGAGGAGGAGGAGGAATCCGCCTCCGAAGACCAAACCCCCACGCCGGCGGAACCCAGTGAGCTCATGCAGTTGGAGATGCCGGAGGACATCCGGGTCGGGTCTCCCAACGACGGGTCTAACAACCTGGACTCGGACTTTCACTTGCTGGCGGTGAGTCAGGGAGGGAACGTGGCGGGACAGGCCGAGTCAACTCGGAGGTGGGGGCCGAGTCAAGACCCGCTACAAACTCAACTACCAGCTTCAGGGCTTGATCCGTTAGAAGAGTTGAGCCAAGAGGACACTCACTACTCTCAAACAGTATCGAACATCCTCCAAAACCAGTTAAGCCGGTGGCCGACCTCACCGTCCTCAGTGGGCTACATCACATACTCGACGGAATCAGCCTTCGCAAAGTGGAGCAGCCGCGGCAGCCAACAGTTGCAACCGACGCTGGACGGCACCAACCAGTGGCTCCTCAAGTACATTCTCTTCACGGTTCCATACCTCCATGCCAAGAACCCCAAGTTGCGCTCCAAGGCAACGCCGCAGGACGACCTCAGCGCCAACCACGTTCTTGCCGAGCGCCGCCGCCGTGAGAAGCTCAATGAGCGCTTCATCATCCTCCGCTCCCTCGTTCCCTTCGTCACCAAAATGGACAAGGCTTCCATATTGGGAGACACCATTGAGTATGTCAAGCAGTTGCGCCGCAAGATCCAGGAGCTCGAGGCCCAACAACCTACCATGCTCCCTCAGGTTATAATGGGTCAGAGAACGGGTAGCAGTTCGAGCAAGGAGCAGAGAAGTGGGGTGACAGTGATGGAGAAAAGGAAGGTGAGGATCGTGGAAGGGGTGGCGGCGACGGCCAAGGCGGTGGAGGTTGAAGGCACCACGTCGGTGCAAGTTTCGATCATTGAGAGTGATGCGCTGTTGGAGATTGAGTGTTCCCACAGAGAAGGGTTGCTTCTGGATGTGATGCAGATGCTGCGGGAGTTGAAGATTGAGGTTATAGGGGTCCAGTCTTCGCTTAACAATGGCCTCTTCGTTGCTGAGTTAAGGGCTAAAGTGAAGGATCATGGCAACGGGAAAAAGGTGAGCATTGTCGAAGTCAAGAGAGCTCTTAACCAAATTATACCCCACGACTGTTGAGTAGTACCATTCTCTCATCACTTTATGAATTCATATTCCAAGTCCAATTCATTGCCTTCTCTCTTCTTCTAAGCCACACAATACGTATGCCCCTCATGATCATTTGCTTTAGGCTTACGTGATTACCCATGCGCATGTGGTATCCTCTTCATGTGTATCTACATTCAACTCAGATAGTAAATAAACCCATAAGTATTTTTCTCAGTAAGCCATAAGGCTGAAGAACTAATTCAAAAGAAACTAGGGATCAGTATTATATTGTCTTCAAAGTTTAGTAAATTGATTAAACTAGATGACACTCAATAATTTTACTGTACTAGTTATTT 2636 0.4996 MAAPLGNRLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPARRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRKHVWLTGANEVDSKTFSRAILAKSARIQSDRFGIYEVQTVVCIPLLDGVVEFGTTDKVQEDLNLVQHVKSFFIDHHHYPLPPKPALSEHSTSNPTSSSDHIPVVMYTVADPPAAHLNQDDDMDEDEEDQEEEEEEESASEDQTPTPAEPSELMQLEMPEDIRVGSPNDGSNNLDSDFHLLAVSQGGNVAGQAESTRRWGPSQDPLQTQLPASGLDPLEELSQEDTHYSQTVSNILQNQLSRWPTSPSSVGYITYSTESAFAKWSSRGSQQLQPTLDGTNQWLLKYILFTVPYLHAKNPKLRSKATPQDDLSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEAQQPTMLPQVIMGQRTGSSSSKEQRSGVTVMEKRKVRIVEGVAATAKAVEVEGTTSVQVSIIESDALLEIECSHREGLLLDVMQMLRELKIEVIGVQSSLNNGLFVAELRAKVKDHGNGKKVSIVEVKRALNQIIPHDC 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02224 634 Coils Coil 477 497 - -
Pste4g02224 634 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 438 487 IPR011598 GO:0046983
Pste4g02224 634 SMART finulus 444 493 IPR011598 GO:0046983
Pste4g02224 634 Pfam Helix-loop-helix DNA-binding domain 441 488 IPR011598 GO:0046983
Pste4g02224 634 Gene3D - 431 501 IPR036638 GO:0046983
Pste4g02224 634 MobiDBLite consensus disorder prediction 242 277 - -
Pste4g02224 634 Coils Coil 251 271 - -
Pste4g02224 634 PANTHER TRANSCRIPTION FACTOR TT8 7 631 - -
Pste4g02224 634 MobiDBLite consensus disorder prediction 248 270 - -
Pste4g02224 634 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 439 508 IPR036638 GO:0046983
Pste4g02224 634 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 201 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02224 Pste-Chr4 16102690 16117140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02224 9 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 73.113 1.88e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g02224 bHLH-MYC_N 1.2e-50 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02224 4 16102690 16117140 Pste4g02224 4 16102690 16117140 ECH
Pste5g00842 5 5321608 5331027 Pste4g02224 4 16102690 16117140 PCT