Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02177 ATGCAGGTTCAAGAGGAATTACTTTTGGTTTCGAAGGATCAGATGATGATCAAAGGCAAGCGCACCAAGCGTCAAAGAGCACCATCCCCTATTAGGCTAGCCATGCCTAATTCAACCACAAATTCCACCACTAACAATTCAATTGATAGTGCAACAACCTCCTCACCCACCAACACCACAGTTGAATTGAGAGAAGATGAAGACATGGCTAATTGTCTCATTCTTCTTGCTCAAGGCAGACACCACGTGGCAGCACCTAACAACAAGTCAACAAGCCTAGACCTTTACGAGTGCAAAACTTGCAACAGATGCTTCCCTTCATTCCAAGCACTTGGAGGACACAGAGCGAGTCACAAGAAGCCCAAGCAAAACGGCACTTTTTCAGAAGCAGTTACTCCTTTTGTTGAAGACAATGATCCCTATGACCCCACCACAAGCACCACCCTCTCGTTGAAAACACCGAACGGGGTTAACATTAATCTGTCTAGCACCAGCACTGCCACCACAACAACAAAAGCTAAAGTTCACGAGTGTTCTATCTGTGGTGCTGAATTCTCATCTGGCCAAGCCTTGGGGGGGCACATGAGGCGTCACAGAACTCTTGTGAACGCTTTTGTAGCATCTCCTATGACTGCTGTAAATGGTGTTGTTGGTGCTGGTAGTGGTAGCCATGAGTTACCAGAACCCAAGAAACGCTTGAAGTTGGACTTGAATCTTCCCGCACCAGAGGATGATCATAGAGAACCCAAGTTTTTGTTTCAGCAAAGAGAGAAAAACGTTATTGTCTTCTCTCCATCTTCTTTGGTGGATTGCCATTACTGA 822 0.4586 MQVQEELLLVSKDQMMIKGKRTKRQRAPSPIRLAMPNSTTNSTTNNSIDSATTSSPTNTTVELREDEDMANCLILLAQGRHHVAAPNNKSTSLDLYECKTCNRCFPSFQALGGHRASHKKPKQNGTFSEAVTPFVEDNDPYDPTTSTTLSLKTPNGVNINLSSTSTATTTTKAKVHECSICGAEFSSGQALGGHMRRHRTLVNAFVASPMTAVNGVVGAGSGSHELPEPKKRLKLDLNLPAPEDDHREPKFLFQQREKNVIVFSPSSLVDCHY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02177 273 PANTHER ZINC FINGER PROTEIN ZAT5 23 255 - -
Pste4g02177 273 Pfam C2H2-type zinc finger 96 121 - -
Pste4g02177 273 Pfam C2H2-type zinc finger 175 199 - -
Pste4g02177 273 Gene3D Classic Zinc Finger 93 198 - -
Pste4g02177 273 SMART c2h2final6 176 198 IPR013087 -
Pste4g02177 273 SMART c2h2final6 96 118 IPR013087 -
Pste4g02177 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 198 IPR013087 -
Pste4g02177 273 MobiDBLite consensus disorder prediction 32 60 - -
Pste4g02177 273 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Pste4g02177 273 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Pste4g02177 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Pste4g02177 273 MobiDBLite consensus disorder prediction 18 60 - -
Pste4g02177 273 SUPERFAMILY beta-beta-alpha zinc fingers 95 198 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02177 Pste-Chr4 15810768 15811589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02177 15 273 C2H2 Transcription Factor Family AT5G03510 42.014 1.41e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g02177 zf-C2H2_6 1e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02177 4 15810768 15811589 Pste1g02739 1 11190548 11191472 ECH
Pste4g02177 4 15810768 15811589 Pste4g02177 4 15810768 15811589 ECH